View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_high_1 (Length: 540)
Name: NF4002_high_1
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Original strand, 15731513 - 15732027
Alignment:
| Q |
16 |
aaatacaactatggagttgttagaaacacataagtggctgtgataggctattgaaaccacttaatagtcatcgaagatagatacaactcttgtaaaattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
15731513 |
aaatacaactatggagttgttagaaacacataagtggctgtgataggctattgaaaccacttaatagtcatcgaagatagatacaactcttgcaatattt |
15731612 |
T |
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| Q |
116 |
acaataatggagctctccaatttaaaagtataagtgagttttgtagttatagttacctcatttataattttagtgttagtgtctaataatcaggttagtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15731613 |
acaataatggagctctccaatttaaaagtataagtgagttttgtagttatagttacctcatttataattttagtgttagtgtctaataatcaggttagtc |
15731712 |
T |
|
| Q |
216 |
ctttgaacttggatgtcttggacgagtcaagagaatggtgtccctgcatgccttggacgagtcaagaatagtacttgaatgttgatttttaacctccaac |
315 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15731713 |
ctttgaacttggatgtcttggacgagttaagagaatggtgtccctgcatgccttggacgagtcaagaatagtacttgaatgtggatttttaacctccaac |
15731812 |
T |
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| Q |
316 |
ataaattttgatcaatttgtgccaaaagtcttcgagcaccaaatcaaacttatcatgcaaagggaaaatcaacatgcgatttgactattatatctatnnn |
415 |
Q |
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| T |
15731813 |
ataaattttgatcaatttgtgccaaaactcttcgagcaccaaatcaaacttatcatgcaaagggaaaatcaacatgcgatttaactattatatctataaa |
15731912 |
T |
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| Q |
416 |
nnnnnnggagagaaactaaacaattgaactcgaatgataactgataaatgagtgagcgaatcgttcgaaagaatccaatttgatttctgaatgaaacaat |
515 |
Q |
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| T |
15731913 |
aaaaatggagagaaactaaacaa-tgaactcgagtgataactaataaatgagtgagcgaatcgtttgaaagaatccaatttgattcctgaatgaaacaat |
15732011 |
T |
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| Q |
516 |
tcttggtcagaataat |
531 |
Q |
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||||||||||| |||| |
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| T |
15732012 |
tcttggtcagattaat |
15732027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 4633768 - 4633685
Alignment:
| Q |
282 |
aatagtacttgaatgttgatttttaacctccaacataaattttgatcaatttgtgccaaaagtcttcgagcaccaaatcaaactt |
366 |
Q |
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| T |
4633768 |
aatagtacctggatgctgatttttaacttc-aacttaaattctaatcaatttgttccaaaagtcttcaagcactaaatcaaactt |
4633685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 22763576 - 22763657
Alignment:
| Q |
282 |
aatagtacttgaatgttgatttttaacctccaacataaattttgatcaatttgtgccaaaagtcttcgagcaccaaatcaaac |
364 |
Q |
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|||||||||| ||||||||||||||| || ||| |||||| |||||||||||| ||| | || ||||||||| ||||||||| |
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| T |
22763576 |
aatagtacttagatgttgatttttaacttc-aacttaaattctgatcaatttgttccagacgtattcgagcactaaatcaaac |
22763657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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