View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4002_high_19 (Length: 246)

Name: NF4002_high_19
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4002_high_19
NF4002_high_19
[»] chr5 (3 HSPs)
chr5 (16-246)||(26354219-26354449)
chr5 (21-246)||(9815630-9815855)
chr5 (46-233)||(38434911-38435098)
[»] chr3 (18 HSPs)
chr3 (34-246)||(20015511-20015723)
chr3 (20-242)||(26647604-26647826)
chr3 (40-246)||(19838989-19839195)
chr3 (40-246)||(19956680-19956886)
chr3 (53-246)||(19819156-19819349)
chr3 (47-246)||(19812879-19813078)
chr3 (48-246)||(19832466-19832664)
chr3 (19-233)||(26653757-26653971)
chr3 (45-246)||(20033655-20033856)
chr3 (19-196)||(20007567-20007744)
chr3 (65-246)||(20035944-20036125)
chr3 (38-246)||(19951720-19951928)
chr3 (162-233)||(19990134-19990205)
chr3 (36-246)||(19849592-19849802)
chr3 (142-233)||(24839392-24839483)
chr3 (142-246)||(19858668-19858772)
chr3 (142-246)||(19854096-19854200)
chr3 (46-246)||(20046716-20046916)
[»] chr1 (2 HSPs)
chr1 (47-246)||(1717816-1718015)
chr1 (53-246)||(38483569-38483770)
[»] chr8 (4 HSPs)
chr8 (48-233)||(22655640-22655825)
chr8 (142-233)||(11544679-11544770)
chr8 (170-246)||(22689119-22689195)
chr8 (142-208)||(11563841-11563907)
[»] chr2 (1 HSPs)
chr2 (142-233)||(39191394-39191485)
[»] chr7 (5 HSPs)
chr7 (19-155)||(12495286-12495422)
chr7 (19-155)||(12519090-12519226)
chr7 (180-219)||(12581884-12581923)
chr7 (180-230)||(12497758-12497808)
chr7 (180-230)||(12521623-12521673)
[»] chr4 (1 HSPs)
chr4 (19-151)||(6397076-6397208)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 26354219 - 26354449
Alignment:
Q  16 tttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354219 tttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaat 26354318  T
Q  116 ctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattg 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26354319 ctgtatcaaatataagcctacaatagtttttccaagcaatgaatttagtctcattaaatctaggcacataacttggaacatcttgatccattccaaattg 26354418  T
Q  216 catagcaactctatgtggcaaatactgctct 246  Q
    |||||||||||||||||||||||||||||||    
T  26354419 catagcaactctatgtggcaaatactgctct 26354449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 9815855 - 9815630
Alignment:
Q  21 aacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgta 120  Q
    |||||||||||||||||||||||  |||||| |||||||||||| ||| |||||||| |||||||||||| ||||||||||||| |||||||||| |  |    
T  9815855 aacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttga 9815756  T
Q  121 tcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatag 220  Q
    ||| ||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  9815755 tcagatataagcctacaatagtttttccaagccatgagtttagtctcattgaatctaggcacataagttggaacatcttgatccatttcaaattgcatag 9815656  T
Q  221 caactctatgtggcaaatactgctct 246  Q
    ||||||||||||||||||||||||||    
T  9815655 caactctatgtggcaaatactgctct 9815630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 38434911 - 38435098
Alignment:
Q  46 gattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttt 145  Q
    |||||| |||||||| ||||||||||  |||| |||||||||||| | | ||||||||| |||||||||| | |||||||||| || || |  |||||||    
T  38434911 gattgcttccaccaccttgcataacgcttggtaacatctgcctcaaataatcttggtggaaaatacaaatttttatcaaatatgagactgcggtagtttt 38435010  T
Q  146 tccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    || |||||||  || |||||||||| || ||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||    
T  38435011 tctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctctatgtgg 38435098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 20015511 - 20015723
Alignment:
Q  34 tgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtc 133  Q
    ||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||| | | ||||| ||||||| |    
T  20015511 tgacccaataccgattgcttccaccacattgcataacgtgtggctacatctgcctcaaagagtcttggtggaaaatacaagtttttatcagatataagcc 20015610  T
Q  134 tacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    ||||||| | |||||||||| ||| | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  20015611 tacaataatatttccaagcagtgattttagtctcattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtgg 20015710  T
Q  234 caaatactgctct 246  Q
    |||||||||||||    
T  20015711 caaatactgctct 20015723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 26647826 - 26647604
Alignment:
Q  20 taacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgt 119  Q
    ||||||||||  || ||||||||| ||||||  |||||||| |||||||||| || || |||||||||||| ||| ||| | |||||||||||||    |    
T  26647826 taacaaaatcatcacgacccaatactgattgtttccaccaccttgcataacgggtagtaacatctgcctcaaaaaatctcgatgggaaatacaaactcct 26647727  T
Q  120 atcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcata 219  Q
    |||| ||||  ||||||| ||||||||||||||||||  | ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  26647726 atcagatatgcgtctacagtagtttttccaagcaatgtctttagtctcattgaatcgaggcacatcactcggaacatcttgatccattccaaattgcata 26647627  T
Q  220 gcaactctatgtggcaaatactg 242  Q
    |||||||||||||||| ||||||    
T  26647626 gcaactctatgtggcagatactg 26647604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 19839195 - 19838989
Alignment:
Q  40 aatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaat 139  Q
    |||| ||||||  |||||||| ||||||||||| |||| |||||||||||| | | ||||||||| |||||||| | | ||||| ||||  |||| ||||    
T  19839195 aatactgattgtatccaccaccttgcataacgtatggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcaat 19839096  T
Q  140 agtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaata 239  Q
    ||||||||||||||||| || ||||| ||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||    
T  19839095 agtttttccaagcaatgtatttagtcacattgaacctagccacataacctggaacatcttgatccattccgaattgcatagcaactctatgtggaagata 19838996  T
Q  240 ctgctct 246  Q
     ||||||    
T  19838995 ttgctct 19838989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 19956886 - 19956680
Alignment:
Q  40 aatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaat 139  Q
    |||| |||||||  ||||||| |||||||||||||||| |||||||||||| | | ||||||||| |||||||| | | ||||| ||||  |||| || |    
T  19956886 aatactgattgcacccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcagt 19956787  T
Q  140 agtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaata 239  Q
    ||||||||||||||||| || ||||||||||||| ||||  |||||||  |||||||||||||| ||||||||||||||||||||||||||||| | |||    
T  19956786 agtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactctatgtggaagata 19956687  T
Q  240 ctgctct 246  Q
     ||||||    
T  19956686 ttgctct 19956680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 19819349 - 19819156
Alignment:
Q  53 tccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagc 152  Q
    |||||||| |||||||||||||||| |||||||||||| | | ||||||||| |||||||| | | ||||| ||||  | || || ||||||||||||||    
T  19819349 tccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaagc 19819250  T
Q  153 aatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctct 246  Q
    |||| || ||||||||||||| |||| ||||||||  |||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||    
T  19819249 aatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaagatattgctct 19819156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 19813078 - 19812879
Alignment:
Q  47 attgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagttttt 146  Q
    ||||| |||||||| |  ||||| | ||||| |||||||||||| ||||||||||||| |||||||| | | ||||| |||| || || || ||||||||    
T  19813078 attgcttccaccacttgacataatgcgtggtaacatctgcctcaaaaagtcttggtggaaaatacaattttttatcagatatgagcctgcagtagttttt 19812979  T
Q  147 ccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctct 246  Q
    ||| ||||| | | |||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||    
T  19812978 ccatgcaatcactttagttttattgaacctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctct 19812879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 19832664 - 19832466
Alignment:
Q  48 ttgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttc 147  Q
    |||| |||||||| |||||||||||||||| |||||||||||| | | ||||||||| |||||||| | | ||||| ||||  | || || |||||||||    
T  19832664 ttgcttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttc 19832565  T
Q  148 caagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctct 246  Q
    ||||||||| || ||||||||||||| |||| ||||||||  |||||||||||||| |||||||  |||||||||||||||||||| | ||| ||||||    
T  19832564 caagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaagatattgctct 19832466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 26653971 - 26653757
Alignment:
Q  19 ttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctg 118  Q
    |||||||||||  ||||||||||||    |||| |||||||| ||||||||||  || | |||||||||||| | |  |||||||| |||||||||| |     
T  26653971 ttaacaaaatctccatgacccaataccagttgcttccaccactttgcataacgcatgatgacatctgcctcaaacaaccttggtggaaaatacaaatttt 26653872  T
Q  119 tatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcat 218  Q
    ||| | | ||| | || || ||||||| |||||||||| || ||||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||    
T  26653871 tataagaaataggcctgcagtagttttcccaagcaatgtatttagtctcattgaacctagccacataacttggaacatcttggtcaattccaaattgcat 26653772  T
Q  219 agcaactctatgtgg 233  Q
    |||||||||||||||    
T  26653771 agcaactctatgtgg 26653757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 246
Target Start/End: Original strand, 20033655 - 20033856
Alignment:
Q  45 tgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagttt 144  Q
    ||||||| |||||||  |||||||||| ||||| |||||||||||| | | ||||||||| |||||||||| |  |||| | ||  | | ||| ||||||    
T  20033655 tgattgcttccaccagtttgcataacgcgtggtaacatctgcctcaaataatcttggtggaaaatacaaattttcatcagagatgggccgacagtagttt 20033754  T
Q  145 ttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgct 244  Q
     |||||||| |   | ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||    
T  20033755 ctccaagcattctctttagtctcgttgaacctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgct 20033854  T
Q  245 ct 246  Q
    ||    
T  20033855 ct 20033856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 20007567 - 20007744
Alignment:
Q  19 ttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctg 118  Q
    |||||||||||| ||||||||||||    |||| |||||||| ||||||| ||||||  |||| |||||||| ||  ||||||||| |||||||||| |     
T  20007567 ttaacaaaatcgccatgacccaataccacttgcttccaccactttgcatatcgtgtgcgtacagctgcctcaaaatatcttggtggaaaatacaaatttt 20007666  T
Q  119 tatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacat 196  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||| | |||||||||    
T  20007667 tatcagatataagcctaaaatagttcttccaagcaatgaatttagtctcattgaacctaggcacattagttggaacat 20007744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 20035944 - 20036125
Alignment:
Q  65 cataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagt 164  Q
    |||||| |||||| |||||||||||| ||||||||||||| |||||||| | | ||||| |||| || || || |||||| |||||||||| | | ||||    
T  20035944 cataacatgtggtaacatctgcctcaaaaagtcttggtggaaaatacaattttttatcagatatgagcctgcagtagtttctccaagcaatcactttagt 20036043  T
Q  165 ctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctct 246  Q
     | |||| | |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||    
T  20036044 tttattgcacctagccacgtaactcggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctct 20036125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 19951928 - 19951720
Alignment:
Q  38 ccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctaca 137  Q
    |||||| |||||||  ||||||| ||||||||||  || |  |||| |||||| ||| | ||| ||| |||||||||| | ||||| ||||  | || ||    
T  19951928 ccaatactgattgctcccaccactttgcataacgcatgctagcatcagcctcaaaaatttttgatggaaaatacaaatttttatcagatatgggcctgca 19951829  T
Q  138 atagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaa 237  Q
     ||||||||||||||||| | | |||| | |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |    
T  19951828 gtagtttttccaagcaatcactttagttttattgaacctaggcacataactcggaacatcttgatccattgcaaattgcatagcaactctatgtggaaga 19951729  T
Q  238 tactgctct 246  Q
    || ||||||    
T  19951728 tattgctct 19951720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 19990205 - 19990134
Alignment:
Q  162 agtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19990205 agtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgg 19990134  T

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Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 19849802 - 19849592
Alignment:
Q  36 acccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtcta 135  Q
    ||||||||  || ||| |||||||| |||||||||||  ||| ||||| |||||  |||| || ||||| |||||||||  | |||||   |   ||||     
T  19849802 acccaataccgagtgcttccaccactttgcataacgtacggtaacatcagcctcgaaaagcctcggtggaaaatacaaacgtttatcatggacgggtctg 19849703  T
Q  136 caatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggca 235  Q
    |||||||||| ||||||||||  | |||| ||||| || || |||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||| |    
T  19849702 caatagttttgccaagcaatgtctttagtatcatttaacctcggcacataacttggaacatcttgatccattccgaattgcaaagagactctatgtggga 19849603  T
Q  236 aatactgctct 246  Q
     ||| ||||||    
T  19849602 gatattgctct 19849592  T

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Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 24839392 - 24839483
Alignment:
Q  142 tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    |||||||||||||||  | |||||||||||| ||||| ||||||||  |||||||||||||| | ||| |||||||||||||||||||||||    
T  24839392 tttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcaactctatgtgg 24839483  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 19858772 - 19858668
Alignment:
Q  142 tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact 241  Q
    |||||||||||||||| |  ||  ||||||||||||| ||||||||  |||||||||||||| | | ||||||||||||||||||||||||| | ||| |    
T  19858772 tttttccaagcaatgacttgagattcattgaatctagacacataaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatatt 19858673  T
Q  242 gctct 246  Q
    |||||    
T  19858672 gctct 19858668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 19854200 - 19854096
Alignment:
Q  142 tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact 241  Q
    |||||||| ||||||| |  ||||||||||| ||| | ||||||||  |||||||||||||| | |||||||||| |||||||||||||||| | ||| |    
T  19854200 tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt 19854101  T
Q  242 gctct 246  Q
    |||||    
T  19854100 gctct 19854096  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 20046916 - 20046716
Alignment:
Q  46 gattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttt 145  Q
    |||||| |||||||| || |||||||  |||| |||||||||||| | | ||||||||| |||||||||| | ||||| | ||  | || || ||||| |    
T  20046916 gattgcttccaccactttacataacgcatggtaacatctgcctcaaacaatcttggtggaaaatacaaatttttatcagacatgggcctgcagtagttgt 20046817  T
Q  146 tccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctc 245  Q
    |||||||| |  |  |  | |  ||| | || ||||||||||| ||||||||||| || | |||||||||||||| |||||||||||| | |||||||||    
T  20046816 tccaagcagtagactttctattgttgcaccttggcacataactcggaacatcttggtcaagtccaaattgcatagaaactctatgtggaagatactgctc 20046717  T
Q  246 t 246  Q
    |    
T  20046716 t 20046716  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 47 - 246
Target Start/End: Complemental strand, 1718015 - 1717816
Alignment:
Q  47 attgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagttttt 146  Q
    ||||| |||||||| |||||||||||| ||| |||| | ||||| ||| ||| | ||| |||||||  | | ||||| ||||  | || || |||| |||    
T  1718015 attgcttccaccaccttgcataacgtgaggtaacatttccctcaaaaaatctcgatggaaaatacatttttttatcagatatgggcctgcagtagtgttt 1717916  T
Q  147 ccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctct 246  Q
    |||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1717915 ccaagcaatggatttagcctcattgaatctaggcacatcacttggaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgctct 1717816  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 38483770 - 38483569
Alignment:
Q  53 tccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatct--------gtatcaaatat-aagtctacaatagtt 143  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | ||||| | |||||| | |         | ||| |||| ||| ||| |||||||    
T  38483770 tccaccacattgcataacgtgtggttacatctgcctcaaaaagtatcggtggaatatacaagtatttcttttcttttcagatataaagcctaaaatagtt 38483671  T
Q  144 tttccaagcaatgaa-tctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactg 242  Q
    |||||||  |||||| | ||||   |||||||| |  ||||||||||| |||||||| |||||| |||||||||||||||||||||  || |||||||||    
T  38483670 tttccaaagaatgaattttagttagattgaatccacacacataacttgtaacatcttaatccataccaaattgcatagcaactcta--tgacaaatactg 38483573  T
Q  243 ctct 246  Q
    ||||    
T  38483572 ctct 38483569  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 22655640 - 22655825
Alignment:
Q  48 ttgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttc 147  Q
    |||| |||||||| |||||||| ||||||| ||||||  |||| | | ||||||||| |||||||| | | ||||| ||||  |||| || |||||||||    
T  22655640 ttgcttccaccaccttgcataatgtgtggtaacatctatctcaaataatcttggtggaaaatacaagtttttatcagatatgggtctgcagtagtttttc 22655739  T
Q  148 caagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    ||||||||| || ||||||||||||| ||||  |||||||  |||||||||||||| |||||||||||||||| ||||||| ||||    
T  22655740 caagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagaaactctacgtgg 22655825  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 11544770 - 11544679
Alignment:
Q  142 tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    |||||||||||||||  |  | |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11544770 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattccaaattgcatagcaactctatgtgg 11544679  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 22689119 - 22689195
Alignment:
Q  170 tgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctct 246  Q
    |||||||||  |||||||  ||||||||||||||||||||||| ||| |||||||||||||||| | ||| ||||||    
T  22689119 tgaatctagagacataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatattgctct 22689195  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 11563841 - 11563907
Alignment:
Q  142 tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattc 208  Q
    |||||||||||||||  |  | |||||||||||||||||||| ||  ||||||||||||||||||||    
T  11563841 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattc 11563907  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 39191394 - 39191485
Alignment:
Q  142 tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 233  Q
    |||||||||||||||  |  |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39191394 tttttccaagcaatggtttcagtctcattgaatctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactctatgtgg 39191485  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 12495286 - 12495422
Alignment:
Q  19 ttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctg 118  Q
    |||||||||||  |||||||||| || |||||| ||||| || || |||||||  |||| | |||||||||| | |||| |||||  |||||||||| |     
T  12495286 ttaacaaaatctccatgacccaacatcgattgcttccacaactttacataacgcatggtaatatctgcctcaaacagtcatggtgcaaaatacaaatttt 12495385  T
Q  119 tatcaaatataagtctacaatagtttttccaagcaat 155  Q
    ||| | | || || ||| ||||||||||| |||||||    
T  12495386 tattagacatgagcctagaatagtttttcgaagcaat 12495422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 12519090 - 12519226
Alignment:
Q  19 ttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctg 118  Q
    |||||||||||  |||||||||| || |||||| |||||||| || |||||||  |||| |  ||||||||| | |||| |||||  |||||||||| |     
T  12519090 ttaacaaaatctccatgacccaacatcgattgcttccaccactttacataacgcatggtaatttctgcctcaaacagtcatggtgcaaaatacaaatttt 12519189  T
Q  119 tatcaaatataagtctacaatagtttttccaagcaat 155  Q
    ||| | | || || ||| ||||||||||| |||||||    
T  12519190 tattagacatgagcctagaatagtttttcgaagcaat 12519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 12581923 - 12581884
Alignment:
Q  180 cacataacttggaacatcttgatccattccaaattgcata 219  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  12581923 cacataacttgaaacatcttgatcaattccaaattgcata 12581884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 12497808 - 12497758
Alignment:
Q  180 cacataacttggaacatcttgatccattccaaattgcatagcaactctatg 230  Q
    ||||||||||| |||||||| ||| |||||||||||||||  |||||||||    
T  12497808 cacataacttgaaacatcttaatcaattccaaattgcatacaaactctatg 12497758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 12521673 - 12521623
Alignment:
Q  180 cacataacttggaacatcttgatccattccaaattgcatagcaactctatg 230  Q
    ||||||||||| |||||||| ||| |||||||||||||||  |||||||||    
T  12521673 cacataacttgaaacatcttaatcaattccaaattgcatacaaactctatg 12521623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 6397076 - 6397208
Alignment:
Q  19 ttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctg 118  Q
    |||||||||||  ||||||| || |  |||||| || ||||| |||||||| |  | || ||||| |||||| | ||||||||||| |||||||||| |     
T  6397076 ttaacaaaatctccatgacctaacaccgattgcttctaccactttgcataatgcatagtaacatcagcctcaaacagtcttggtggaaaatacaaatttt 6397175  T
Q  119 tatcaaatataagtctacaatagtttttccaag 151  Q
    ||||| | ||| | ||| | |||||||||||||    
T  6397176 tatcagacataggcctagagtagtttttccaag 6397208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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