View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_high_23 (Length: 221)
Name: NF4002_high_23
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32651483 - 32651696
Alignment:
| Q |
1 |
tgtgtaataaaagagttaaaggaagacaaaataatacaatttatttatcatgattcatgataaactcgagagctacactcaattattccatttcagataa |
100 |
Q |
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| T |
32651483 |
tgtgcaataaaagagttaaaggaagacaaaataatacaatttatttatcat---tcatgataaattcgagagctacactcaattattccatttcagataa |
32651579 |
T |
|
| Q |
101 |
atttttccttatgtgcaacaatcggtcacacacgtagtctggttgacat------tatatatacgtacatgtaactttcttaagacaacacttcaactaa |
194 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32651580 |
atttttccttatgtgcaacaatcgatcacacacgtattctggttggcattatatatatatatacgtacatgtaactttcttaagacaacatttcaactaa |
32651679 |
T |
|
| Q |
195 |
gtgtccactaacctatg |
211 |
Q |
| |
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||||||||||||||||| |
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| T |
32651680 |
gtgtccactaacctatg |
32651696 |
T |
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