View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_high_4 (Length: 471)
Name: NF4002_high_4
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 36349108 - 36348638
Alignment:
| Q |
1 |
caacaagtaagaaaaacaaaacccttttttaatcacactcttaatgtaatcttgttttatatgaaaactctaccactttaagattttatgctgactttca |
100 |
Q |
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| T |
36349108 |
caacaagtaagaaaaacaaaacccttttttaatcacactcttaatgtaatcttgttttatatgaaaactctaccactttaagattttatgctgactttca |
36349009 |
T |
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| Q |
101 |
tatcccttttggtagagatttgcacataagtgaggcgctgcaaatgcagattgaggttcagagaagactcaatgaacaacttgaggtgagtctttgcagc |
200 |
Q |
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| T |
36349008 |
tatcccttttggtagagatttgcacataagtgaggcgctgcaaatgcagattgaggttcagagaagactcaatgaacaacttgaggtgagtctttgcagc |
36348909 |
T |
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| Q |
201 |
ttaaatatatatgcatgttaattttggatcatatcagatcctctgcagcgacagcagagctgttagatcttagtatcattgattttgaatgtaagatcta |
300 |
Q |
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| T |
36348908 |
ttaaatatatatgcatgttaattttggatcatatcagatcctctgcagcgacagtagagctgttagatcttagtatcattgattttgaatgtaagatcta |
36348809 |
T |
|
| Q |
301 |
actttactgcagccgttgcagcgaatccaatcgcgttaattttgtttcttgaattgtaagaaaccaatattcaaaacctgtgccaggtacaaagacactt |
400 |
Q |
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| T |
36348808 |
actttactgcagccgttgcagagaatccaatcgcgttaattttgtttcttgaattgtaagaaaccaatattcaaaacctgtgccaggtacaaagacactt |
36348709 |
T |
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| Q |
401 |
gcagctaaggatagaagctcaagggaaataccttcaatcagtgcttgaaaaagctcaagaaacacttggta |
471 |
Q |
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| T |
36348708 |
gcagctaaggatagaagctcaagggaaataccttcaatcagtgcttgaaaaagctcaagaaacacttggta |
36348638 |
T |
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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 10292394 - 10292312
Alignment:
| Q |
384 |
caggtacaaagacacttgcagctaaggatagaagctcaagggaaataccttcaatcagtgcttgaaaaagctcaagaaacact |
466 |
Q |
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||||||||| ||||||| || ||| ||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
10292394 |
caggtacaacgacacttacaactacggatagaggctcaagggaagtaccttcaatcagtgcttgaaaaagctaaggaaacact |
10292312 |
T |
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