View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4002_high_6 (Length: 430)
Name: NF4002_high_6
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8498558 - 8498336
Alignment:
| Q |
1 |
atagagtgcaccatcatacctagaatgattgctttcactaaggtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8498558 |
atagagtgcaccatcataccttgaatgattgctttcactaaggtgactcttcctgctatagagagaagagaagctttccaagcactaagcttagatttaa |
8498459 |
T |
|
| Q |
101 |
tcttatctacaatcggttaaagatgtgatctcttttgcttatccttgaaaatcggaacaccaaggtaattgaagggcaatgaacctttgttgaaaccaat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8498458 |
tcttatctacaatcggttgaagatgtgatctcttttgcttacccttgaaaatcagaacaccaaggtaattgaagggcaatgaacctttgttgaaaccaat |
8498359 |
T |
|
| Q |
201 |
caagtctgacatgagattgatcc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8498358 |
caagtctgacatgagattgatcc |
8498336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 27447550 - 27447495
Alignment:
| Q |
58 |
atagagagaagagaagctttccaagcactaagcttagatttaatcttatctacaat |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || ||||||||| |||| |
|
|
| T |
27447550 |
atagagagaagagaagctttccacgcactaagcttagactttatcttatctgcaat |
27447495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 27459889 - 27459834
Alignment:
| Q |
58 |
atagagagaagagaagctttccaagcactaagcttagatttaatcttatctacaat |
113 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| || ||||||||| |||| |
|
|
| T |
27459889 |
atagagagaagaaaagctttccacgcactaagcttagactttatcttatctgcaat |
27459834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 48709047 - 48708983
Alignment:
| Q |
43 |
gtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaatcttatc |
107 |
Q |
| |
|
|||||||| | ||| ||||| | |||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
48709047 |
gtgactctccctgcaatagataaaagagaggctttccaagcaccaagcttagacttaatcttatc |
48708983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 23683631 - 23683530
Alignment:
| Q |
6 |
gtgcaccatcatacctagaatgattgctttcactaaggtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaatctta |
105 |
Q |
| |
|
||||| |||||||||| |||| | |||||||| | |||||||| | ||| ||||| |||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
23683631 |
gtgcatcatcataccttgaatcacagctttcacaagagtgactctccctgcaatagatagaagagaggctttccaagcaccaagcttagacttaatctta |
23683532 |
T |
|
| Q |
106 |
tc |
107 |
Q |
| |
|
|| |
|
|
| T |
23683531 |
tc |
23683530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 23851180 - 23851281
Alignment:
| Q |
6 |
gtgcaccatcatacctagaatgattgctttcactaaggtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaatctta |
105 |
Q |
| |
|
||||| |||||||||| |||| | |||||||| | |||||||| | ||| ||||| |||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
23851180 |
gtgcatcatcataccttgaatcacagctttcacaagagtgactctccctgcaatagatagaagagaggctttccaagcaccaagcttagacttaatctta |
23851279 |
T |
|
| Q |
106 |
tc |
107 |
Q |
| |
|
|| |
|
|
| T |
23851280 |
tc |
23851281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 14776587 - 14776688
Alignment:
| Q |
6 |
gtgcaccatcatacctagaatgattgctttcactaaggtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaatctta |
105 |
Q |
| |
|
||||| |||||||| | |||| | |||||||| | |||||||| | ||| ||||| |||||||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
14776587 |
gtgcatcatcatactttgaatcacagctttcacaagagtgactctccctgcaatagatagaagagaagctttccaagccccaagcttagacttaatctta |
14776686 |
T |
|
| Q |
106 |
tc |
107 |
Q |
| |
|
|| |
|
|
| T |
14776687 |
tc |
14776688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 11304769 - 11304668
Alignment:
| Q |
6 |
gtgcaccatcatacctagaatgattgctttcactaaggtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaatctta |
105 |
Q |
| |
|
||||| |||||||||| |||| | ||||||| | |||||||| | ||| ||||| | |||||| ||||||||||||| | ||||||| ||||||||| |
|
|
| T |
11304769 |
gtgcatcatcataccttgaatcacaactttcacaagagtgactctccctgcaatagataaaagagaggctttccaagcaccatgcttagacttaatctta |
11304670 |
T |
|
| Q |
106 |
tc |
107 |
Q |
| |
|
|| |
|
|
| T |
11304669 |
tc |
11304668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 11966075 - 11965974
Alignment:
| Q |
6 |
gtgcaccatcatacctagaatgattgctttcactaaggtgactcttcatgctatagagagaagagaagctttccaagcactaagcttagatttaatctta |
105 |
Q |
| |
|
||||| |||||||||| |||| | |||||||| | |||||||| | | | ||||| | |||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
11966075 |
gtgcatcatcataccttgaatcacagctttcacaagagtgactctccctacaatagataaaagagaggctttccaagcaccaagcttagacttaatctta |
11965976 |
T |
|
| Q |
106 |
tc |
107 |
Q |
| |
|
|| |
|
|
| T |
11965975 |
tc |
11965974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 41215800 - 41215868
Alignment:
| Q |
58 |
atagagagaagagaagctttccaagcactaagcttagatttaatcttatctacaatcggttaaagatgt |
126 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||| ||||| | | ||||| ||||||||||||||||| |
|
|
| T |
41215800 |
atagatagaagagaagctttccaggcactcaacttggattttaccctatctgcaatcggttaaagatgt |
41215868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University