View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_high_8 (Length: 395)
Name: NF4002_high_8
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 36348170 - 36348539
Alignment:
| Q |
18 |
gaaactcaccaatatctaagtgattctcaactccaatattcatagacaaatttccatgatttctttctaattcattattatttcctaatggagttagaaa |
117 |
Q |
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| T |
36348170 |
gaaactcaccaatatctaagtgattctcaactccaatattcatagacaaatttccatgatttctttctaattcattattatttcctaatggagttagaaa |
36348269 |
T |
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| Q |
118 |
attactgttctttttcacttcctcaacacaccattttagtacttcattgtttctaaggttttgaacagaacctgctaattctgttgcttgttgttctttt |
217 |
Q |
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| T |
36348270 |
attactgttctttttcacttcctcaacacaccattttagtacttcattgtttctaaggttttgaacagaacctgctaattctgttgcttgttgttctttt |
36348369 |
T |
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| Q |
218 |
ctttccatgaacatatggttgttattattgttgttgaagggtcttaatccaaaccctccattttgaatgatttcttgttccttttgtgatcggtcagacg |
317 |
Q |
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| T |
36348370 |
ctttccatgaacacatggttgttattattgttgttgaagtgtcttaatccaaaccctccattttgaatgatctcttgttccttttgtgatcggtcagacg |
36348469 |
T |
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| Q |
318 |
atgttaagcaactactgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctc |
387 |
Q |
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| T |
36348470 |
atgttaagcaactactgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctc |
36348539 |
T |
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