View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_10 (Length: 363)
Name: NF4002_low_10
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 39794701 - 39794365
Alignment:
| Q |
18 |
ataatgtatgtaattgcctt----tgttttcgctgagaaattgaatttttagcttatgtaaccggttgtatatacatggtaaccggttacactctttata |
113 |
Q |
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| T |
39794701 |
ataatgtatgtaattgccttaatttgttttcgctgagaaattgaatttttagcttatgcaaccggttgtatatacatggtaaccggttacactctttata |
39794602 |
T |
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| Q |
114 |
gagggcctgaaaacaatgtttagggacaggtaaccggttaccagttagatagcttgcccataaaatgactttttacttggtaactggttacaccggttgt |
213 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39794601 |
gagggccttaaaacaatgttttgggacaggtaaccggttaccagttagatagcttgcccataaaatgactttttacttggtaaccggttacaccggttgt |
39794502 |
T |
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| Q |
214 |
ccattggcaaaactccaaatttccttatgtaaaatgtgtgttaggttattgtgtaatgacaatcgtttgttatgtatttttcacttaaaagtgacaaaac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39794501 |
tcattggcaaaactccaaatttccttatgtaaaatgtgtgttaggttattgtgtaatgacaatcgtttgttatgtatttttcacttaaaagtgacaaaac |
39794402 |
T |
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| Q |
314 |
aaagctaaatgacatcgcattaatacgagagaataat |
350 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39794401 |
aaagctaaatgacatcgcattaatacgagagaataat |
39794365 |
T |
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