View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_11 (Length: 355)
Name: NF4002_low_11
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 47717282 - 47716951
Alignment:
| Q |
19 |
gtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctag |
118 |
Q |
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| T |
47717282 |
gtggtatggatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagacaacctag |
47717183 |
T |
|
| Q |
119 |
aagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717182 |
aagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaac |
47717083 |
T |
|
| Q |
219 |
atgccttgtacattgtttgaagatatagaagatgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgagttgctacaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717082 |
atgccttgtacattgtttgaagatatagaagatgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgagttgctacaa |
47716983 |
T |
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| Q |
319 |
gtaacttttctgaagctaatattcttggacat |
350 |
Q |
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| T |
47716982 |
gtaacttttctgaagctaataaacttggacat |
47716951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 47745074 - 47744744
Alignment:
| Q |
19 |
gtggtatgaatgcaggataattttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
47745074 |
gtggtatgaatgcaggataattttgacgacataaaatctacttcataataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctag |
47744975 |
T |
|
| Q |
119 |
aagcagtaattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaac |
218 |
Q |
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| T |
47744974 |
atgcagtaattcaaaaatagacagaaggcaaagaaaaatggaagcct----ttgtacaatgtttgattttaaaaattagatattagcatattttcctaac |
47744879 |
T |
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| Q |
219 |
atgccttgtacattgtttgaagatata---gaagatgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgagttgcta |
315 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47744878 |
atgccttgtacaatgtttgaagatataaaagaagatgaaaataatgatattgaaatcactgcgtcattgctattcaacttcgagacattacgagttgcta |
47744779 |
T |
|
| Q |
316 |
caagtaacttttctgaagctaatattcttggacat |
350 |
Q |
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|||||||||||||||||| ||||| ||||||||| |
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| T |
47744778 |
caagtaacttttctgaagataataaacttggacat |
47744744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 39 - 350
Target Start/End: Complemental strand, 47712524 - 47712196
Alignment:
| Q |
39 |
ttttgacgacataaaatttacttcata--ataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaag |
136 |
Q |
| |
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|||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
47712524 |
ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaat |
47712428 |
T |
|
| Q |
137 |
agacagat-ggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagatattagcatattttt--------------ctaacatg |
221 |
Q |
| |
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||| | | || ||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
47712427 |
agaaaaaaagggaaagaaaaatggacgccaatagtcataagtttttttattttaaaaattagatattagcatatttttctatttttactttactaacatg |
47712328 |
T |
|
| Q |
222 |
ccttgtacattgtttgaagatatagaag---atgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgagttgctacaa |
318 |
Q |
| |
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||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47712327 |
ccttgtatcatgtttgaagaaatagaagaaaatgataatgatgatattgaaatcgctgagtcatttctattcaacttcgagacattacgagttgctacag |
47712228 |
T |
|
| Q |
319 |
gtaacttttctgaagctaatattcttggacat |
350 |
Q |
| |
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| ||||||||||||||||||| ||||||||| |
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| T |
47712227 |
ggaacttttctgaagctaataaacttggacat |
47712196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 47759233 - 47759094
Alignment:
| Q |
214 |
ctaacatgccttgta-cattgtttgaagatat---agaagatgataataatgatattgaaatcgctgagtcattgctattcaacttcgagacattacgag |
309 |
Q |
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||||||||||||||| |||| |||||||| || |||||| || ||| |||||||||| || ||||||||||||| ||||||||| |||||||||| || |
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| T |
47759233 |
ctaacatgccttgtatcatt-tttgaagaaatcgaagaagacgacaatgatgatattgacatggctgagtcattgcaattcaactttgagacattacaag |
47759135 |
T |
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| Q |
310 |
ttgctacaagtaacttttctgaagctaatattcttggacat |
350 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
47759134 |
ttgctacaagtaacttttctgaagctaataaacttggacat |
47759094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 47714004 - 47713816
Alignment:
| Q |
21 |
ggtatgaatgcagg--ataattttgacgacataaaatttacttcataataataagt--tgtgatggttaacagagttttgcattcaaatagagaaaacct |
116 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||| |||||| || |||| |||||||| | ||||||| |
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| T |
47714004 |
ggtatgaatgcaggctatagttttgacgacataaaat---cttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacct |
47713908 |
T |
|
| Q |
117 |
agaagcag---------taattccaaaagagacagatggcaaagaaaaatggaagccaatagttataagtattttgattttaaaaattagat |
199 |
Q |
| |
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||| |||| |||||| |||| ||| ||| || ||||||||||| |||||| |||| |||||| |||||||| |||||||||||| |
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| T |
47713907 |
agatgcagtaatagtaataattcaaaaatagaaagaagggaaagaaaaatgcaagccattagtcataagtgttttgattataaaaattagat |
47713816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 47759371 - 47759276
Alignment:
| Q |
39 |
ttttgacgacataaaatttacttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaa |
135 |
Q |
| |
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||||||||| |||||| |||||||||||| |||||||| |||||||||| ||||||||||||||||| | |||| ||||| | |||||||| |||| |
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| T |
47759371 |
ttttgacgatttaaaatctacttcataatattaagttgtaatggttaacaaagttttgcattcaaata-aaaaaaactagatgtagtaattcaaaaa |
47759276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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