View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_13 (Length: 349)
Name: NF4002_low_13
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 22551664 - 22551984
Alignment:
| Q |
14 |
agacaatgaggggaggattgtggtacgtattcccttgtatactaaattaaacaaccctccaaatttccaggtatgaataatcagaataataagactaaaa |
113 |
Q |
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| T |
22551664 |
agacaatgaggggaggattgtggtaagtattcccttgtatactaaattaaacaaccctccaaatttccaggtatgaataatcagaataataagactaaaa |
22551763 |
T |
|
| Q |
114 |
-acaagtgcttccaattgcagaataaatttgcattaactacaaaagagatcactgccaattctcaattaatttttgcttcctattcctcagaatcattca |
212 |
Q |
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| T |
22551764 |
aacaagtgcttccaattgcagaataaatttgcattaactacaaaagagatcagtgccaattctcaattgatttttgcttcctattcctcagaatcattca |
22551863 |
T |
|
| Q |
213 |
agttgtgggaccacttattttttggatctatttgctgtattttaaccttactctcaaatagttccaagaacttcaagataaagaaaaactattgattgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22551864 |
agttgtgggaccacttattttttggatctatttgctgtattttaaccttactttcaaatagttccaagaacttcaagataaagaaaaactattgattgat |
22551963 |
T |
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| Q |
313 |
gcacgagccttgtgactaagc |
333 |
Q |
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||||||||||||||||||||| |
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| T |
22551964 |
gcacgagccttgtgactaagc |
22551984 |
T |
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