View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4002_low_14 (Length: 328)

Name: NF4002_low_14
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4002_low_14
NF4002_low_14
[»] chr3 (5 HSPs)
chr3 (1-320)||(55211546-55211861)
chr3 (214-320)||(30912028-30912135)
chr3 (145-312)||(36326473-36326640)
chr3 (218-320)||(32414709-32414816)
chr3 (153-293)||(14029319-14029469)
[»] chr7 (8 HSPs)
chr7 (145-320)||(42513062-42513239)
chr7 (224-320)||(41712267-41712364)
chr7 (220-320)||(38572287-38572388)
chr7 (164-312)||(49017108-49017258)
chr7 (145-293)||(30456308-30456456)
chr7 (142-240)||(6102956-6103056)
chr7 (162-266)||(11206499-11206604)
chr7 (145-293)||(30452703-30452847)
[»] chr6 (6 HSPs)
chr6 (144-320)||(4834692-4834870)
chr6 (145-320)||(33242822-33242998)
chr6 (145-320)||(7415612-7415789)
chr6 (145-320)||(7426559-7426736)
chr6 (145-312)||(7422628-7422797)
chr6 (145-246)||(13886589-13886691)
[»] chr5 (5 HSPs)
chr5 (141-320)||(8123501-8123682)
chr5 (214-320)||(671435-671542)
chr5 (144-271)||(41709523-41709651)
chr5 (145-289)||(24108702-24108848)
chr5 (145-239)||(10321869-10321963)
[»] chr1 (4 HSPs)
chr1 (145-293)||(23405475-23405624)
chr1 (145-320)||(18583886-18584063)
chr1 (210-271)||(13087701-13087763)
chr1 (152-237)||(9893800-9893886)
[»] chr8 (2 HSPs)
chr8 (145-290)||(44761971-44762117)
chr8 (145-290)||(44765278-44765424)
[»] chr2 (3 HSPs)
chr2 (162-293)||(45327421-45327553)
chr2 (145-250)||(31211857-31211963)
chr2 (252-320)||(31211662-31211731)
[»] chr4 (4 HSPs)
chr4 (145-290)||(36050668-36050813)
chr4 (145-290)||(36053927-36054072)
chr4 (145-293)||(27387621-27387770)
chr4 (267-320)||(20441042-20441096)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 55211546 - 55211861
Alignment:
Q  1 cattaccttaccacacatttcaccgaagctacaattcattgcttcaacaaaatcatggcaatatgttttattgttaggcgagaagtgttctcccactgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211546 cattaccttaccacacatttcaccgaagctacaattcattgcttcaacaaaatcatggcaatatgttttattgttaggcgagaagtgttctcccactgcc 55211645  T
Q  101 aaactaaacagtagcagaagatgcacaagaagtgttgctgatattgatactacccaatttaagtagggatcacattccataaattagagaaaaactagag 200  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  55211646 aaaccaaacagtagcagaagatgcacaacaagtgttgctgatattgatactatccaatttaagtaggaagcacattccataaattagagaaaaactagag 55211745  T
Q  201 ataagagagaaataaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||||||||||||||| |||||||||||| |||||||    
T  55211746 ataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcataataagataagtgcac 55211840  T
Q  300 cctaacatactcagtattatc 320  Q
    ||||||||||||| |||||||    
T  55211841 cctaacatactcaatattatc 55211861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 320
Target Start/End: Complemental strand, 30912135 - 30912028
Alignment:
Q  214 aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 312  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  30912135 aaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcaccctaacatactca 30912036  T
Q  313 gtattatc 320  Q
     |||||||    
T  30912035 atattatc 30912028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 145 - 312
Target Start/End: Complemental strand, 36326640 - 36326473
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 36326542  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 312  Q
    ||||||  ||||||||  |||||||||||  ||||||||||||||||  | ||||||||||||||||||||    
T  36326541 taataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactca 36326473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 32414816 - 32414709
Alignment:
Q  218 tcattatatttttcattgattctcataataagacatacaatatttatatagac----ttgtgcatactcataataagat-agtgcaccctaacatactca 312  Q
    ||||||||||||| |||||||||| ||||||| |||||||| |||||||||||    ||||||| ||||| |||||||| |||||||| ||||||||| |    
T  32414816 tcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacatactta 32414717  T
Q  313 gtattatc 320  Q
     |||||||    
T  32414716 atattatc 32414709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 14029469 - 14029319
Alignment:
Q  153 cccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca-----taa 245  Q
    |||||||  ||||||||||||| |||| || ||||||  | ||||||||||||| ||| ||  ||||||||||||||||||||||||||| |     |||    
T  14029469 cccaattcgagtagggatcacactccagaatttagagtgagaaactagagataaaaga-aaggaaattcattatatttttcattgattctaaatttctaa 14029371  T
Q  246 t----aagacatacaatatttatatagacttgtgcatactcataataagata 293  Q
    |    |||||||| ||| ||||||||| ||||||||||||||| ||||||||    
T  14029370 tccacaagacatataatgtttatataggcttgtgcatactcattataagata 14029319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 145 - 320
Target Start/End: Original strand, 42513062 - 42513239
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| |||||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 42513160  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||  ||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  42513161 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatc 42513239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 41712364 - 41712267
Alignment:
Q  224 tatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||| | |||||||    
T  41712364 tatttttcattcattctcataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatc 41712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 38572287 - 38572388
Alignment:
Q  220 attatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtatta 318  Q
    ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| |||| |||||||| |||||| |||||    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
Q  319 tc 320  Q
    ||    
T  38572387 tc 38572388  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 49017258 - 49017108
Alignment:
Q  164 tagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaatatt 261  Q
    ||||||||||| ||||||||||||||| |  |||||||||||| ||| | | ||||  ||||||||||||||| | |||||||||||| ||||||||  |    
T  49017258 tagggatcacactccataaattagagagagaaactagagataaaagaaaga-aaatatattatatttttcattaagtctcataataaggcatacaatgct 49017160  T
Q  262 tatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 312  Q
    |||| | ||||||| ||| |||||||||||| |||||| | |||||||||||    
T  49017159 tatacaaacttgtggatagtcataataagataagtgcatcataacatactca 49017108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 30456456 - 30456308
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||  |||| |    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa 30456358  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagata 293  Q
    | ||||| |||| |||  |||||||||||| ||||||||||||||||||||    
T  30456357 tcataaggcatataatgcttatatagactt-tgcatactcataataagata 30456308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 6103056 - 6102956
Alignment:
Q  142 tattgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattc 239  Q
    ||||||||| ||||||||  |||||| |||||| ||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  6103056 tattgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattgattc 6102957  T
Q  240 t 240  Q
    |    
T  6102956 t 6102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 11206604 - 11206499
Alignment:
Q  162 agtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata 259  Q
    ||||| ||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| ||||||||     
T  11206604 agtagagatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctcataataaggcatacaatg 11206506  T
Q  260 tttatat 266  Q
    |||||||    
T  11206505 tttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 30452847 - 30452703
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||  |||| |    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa 30452749  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagata 293  Q
    | ||||| |||||||    ||||||||||| ||||||||||||||||||||    
T  30452748 tcataaggcatacaa----tatatagactt-tgcatactcataataagata 30452703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 144 - 320
Target Start/End: Complemental strand, 4834870 - 4834692
Alignment:
Q  144 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 241  Q
    ||||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||     
T  4834870 ttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattcta 4834772  T
Q  242 ataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||| || ||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatc 4834692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 320
Target Start/End: Complemental strand, 33242998 - 33242822
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||| ||||||| |||| |||||||||| |  ||||||| |||| ||| ||| |||||||||||||||||||||||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaaga-aaagaaattcattatatttttcattgattctca 33242900  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  33242899 taataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatc 33242822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 145 - 320
Target Start/End: Complemental strand, 7415789 - 7415612
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| | |||| || ||||||||||||| |||| |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7415691  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||| ||||||||  |||||||||||| ||  ||||||||||||||| |||||||| ||||||||||| |||||||    
T  7415690 taataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatc 7415612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 145 - 320
Target Start/End: Complemental strand, 7426736 - 7426559
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattaga--gaaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||||  || ||| |||||| |||||| | | |||||||||||||||||||||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaaga-aaattcattatatttttcattgattctca 7426638  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||| |||||||| ||||||||||||| ||  ||||| ||||||||| |||||||| ||||||||||| |||||||    
T  7426637 taataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatc 7426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 312
Target Start/End: Complemental strand, 7422797 - 7422628
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| || | |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7422699  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 312  Q
    ||||||| ||||||||  |||||||||||| ||  ||||| ||||||||| |||||||| |||||||||||    
T  7422698 taataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactca 7422628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | ||||||||||||||||||||||||||| |    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctaa 13886593  T
Q  243 taat 246  Q
    ||||    
T  13886592 taat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 141 - 320
Target Start/End: Complemental strand, 8123682 - 8123501
Alignment:
Q  141 atattgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgatt 238  Q
    |||||||||| ||||||||  |||| |||||||| | || |||||||||  | ||| || ||| |||||| | | |||||||||||||||||||||||||    
T  8123682 atattgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaaga-aaattcattatatttttcattgatt 8123584  T
Q  239 ctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||||||  ||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  8123583 ctcataataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatc 8123501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 214 - 320
Target Start/End: Complemental strand, 671542 - 671435
Alignment:
Q  214 aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 312  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||| |||| |||||||| ||||||    
T  671542 aaattcattatatttttcattaattctcataataaggcatacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactca 671443  T
Q  313 gtattatc 320  Q
     |||||||    
T  671442 atattatc 671435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  144 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 241  Q
    ||||||| ||||||||  ||||| ||||||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattctc 41709553  T
Q  242 ataataagacatacaatatttatatagact 271  Q
    |||||||| |||||||| ||||||||||||    
T  41709552 ataataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 24108848 - 24108702
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagagaa--aaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||  |||  |||||||||| || | | ||  |||||||||||||||||||||| |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaa-acaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  243 taataagacatacaatatttatatagacttg-tgcatactcataataa 289  Q
    | ||||||||||||||  ||||||||||||| ||||||||||||||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataa 24108702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 10321869 - 10321963
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaatt--agagaaaaactagagataagagagaaataaattcattatatttttcattgattc 239  Q
    |||||| ||||||||| ||||||||||||| ||||||| ||  ||||| || |||||||||||||| ||  ||||||||||| ||||||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagaga-aaggaaattcattat-tttttcattgattc 10321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 23405475 - 23405624
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| |||||||| |||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 23405573  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagata 293  Q
    ||||||| |||||||| |||| |||||||||||||||| |||| |||||||    
T  23405574 taataaggcatacaatgtttagatagacttgtgcatacacatagtaagata 23405624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 320
Target Start/End: Original strand, 18583886 - 18584063
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||| ||| ||| |||| |||||| |||| |||||||||||||| ||| ||  ||||||| |||||||||||||||||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaaga-aaggaaattcagtatatttttcattgattctca 18583984  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    ||||||  ||||||||  ||||||||||||||||||||| |||||| ||| | |||||||||||||||||| |||||||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatc 18584063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 13087763 - 13087701
Alignment:
Q  210 aaataaattcattatattttt-cattgattctcataataagacatacaatatttatatagact 271  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||||||| |||||||||||    
T  13087763 aaataaattcattgtattttttcattcattctcataataaggcatacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 9893886 - 9893800
Alignment:
Q  152 acccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgat 237  Q
    ||||||||| |||||| |||||| | ||||| |||| ||||  |||||||||| | ||| | | ||||||||||||||||||||||||    
T  9893886 acccaatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaaga-aaattcattatatttttcattgat 9893800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 44762117 - 44761971
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||| ||| |||||| ||| ||||||||||||||||||||||||| |||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaa-aaattcattatatttttcattgattttca 44762019  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataag 290  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
T  44762018 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 44761971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 44765424 - 44765278
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||| ||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||| |||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattttca 44765326  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataag 290  Q
    |||||||  ||||||| ||||||||||||||||||||| |||| ||||    
T  44765325 taataaggaatacaatgtttatatagacttgtgcatacacatagtaag 44765278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 293
Target Start/End: Original strand, 45327421 - 45327553
Alignment:
Q  162 agtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata 259  Q
    ||||||||||||| |||| |||||| |||| |||| ||||||||| ||| ||| ||||| |||||||||||||||  ||||||||||||||||||||||     
T  45327421 agtagggatcacactccagaaattaagagagaaaattagagataaaaga-aaagaaatttattatatttttcattttttctcataataagacatacaatg 45327519  T
Q  260 tttatatagacttgtgcatactcataataagata 293  Q
     |||||||||||||||||||| |||| |||||||    
T  45327520 cttatatagacttgtgcatacacatagtaagata 45327553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 31211963 - 31211857
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| | ||||||  ||||||||||||| |||| |||||| |||| |||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaga-aaattcattatatttttcattgattctca 31211865  T
Q  243 taataaga 250  Q
    ||||||||    
T  31211864 taataaga 31211857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 31211731 - 31211662
Alignment:
Q  252 atacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    |||||||| |||||||||||| |||||||||||| |||||| ||||||| |||||||||||| |||||||    
T  31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatc 31211662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 36050813 - 36050668
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| |||||||||||||||||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataag 290  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 36050668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 290
Target Start/End: Complemental strand, 36054072 - 36053927
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| |||||||||||||||||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataag 290  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 36053927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 293
Target Start/End: Complemental strand, 27387770 - 27387621
Alignment:
Q  145 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 242  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | ||||||||||| |  || ||| |||||||||||||||||||||  | || |    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaagga-aaagaaattcattatatttttcattcctgctaa 27387672  T
Q  243 taataagacatacaatatttatatagacttgtgcatactcataataagata 293  Q
    |||| || ||||||||  |||||||||||||||||| ||| ||||||||||    
T  27387671 taatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagata 27387621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 20441042 - 20441096
Alignment:
Q  267 agacttgtgcatactcataataagat-agtgcaccctaacatactcagtattatc 320  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||| |||||||    
T  20441042 agacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatc 20441096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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