View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_15 (Length: 309)
Name: NF4002_low_15
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 39814014 - 39814301
Alignment:
| Q |
1 |
agaattgcttagaggtccaggaagctaccaaagagatgatgttgtaccaaatgagagtcctcttgttgcatgcattagtgaaacaacagaggaaaatatc |
100 |
Q |
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| T |
39814014 |
agaattgcttagaggtccaggaagctaccaaagagatgatgttgtaccaaatgagagtcctcttgttgcatgcattagtgaaacaacagaggaaaatata |
39814113 |
T |
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| Q |
101 |
gccaatgctttgaagcaactttcaaaatctggaggaatatgaaatgcttgtgtatagttatgttaactatctgttctnnnnnnnngttatacatttactt |
200 |
Q |
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| T |
39814114 |
gccaatgctttgaagcaactttcaaaatctggaggaatatgaaatgcttgtgtatagttatgttaactatctgttctaaaaaaaagttatacatttactt |
39814213 |
T |
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| Q |
201 |
ttccaagtattgaatgtaattaactcatacaattatgcataaattgaattcagtcaaaatgttgatagatactgttgttttatttgtt |
288 |
Q |
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| T |
39814214 |
ttccaagtattgaatgtaattaactcatacaattatgcataaattgaattcagtcaaaatgttgatagatactgttgttttctttgtt |
39814301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 15802935 - 15803039
Alignment:
| Q |
10 |
tagaggtccaggaagctaccaaagagatgatgttgtaccaaatgagagtcctcttgttgcatgcattagtgaaacaacagaggaaaatatcgccaatgct |
109 |
Q |
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||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||| |||| |||||||| | |||||| || || |||||| |
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| T |
15802935 |
tagaggtccaggaagttaccaaagggatgatgttgtacctgataagagtcctcttgttgcatgtattactgaaacaagtgtggaaaaaattgctaatgct |
15803034 |
T |
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| Q |
110 |
ttgaa |
114 |
Q |
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||||| |
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| T |
15803035 |
ttgaa |
15803039 |
T |
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