View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_16 (Length: 295)
Name: NF4002_low_16
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 55211881 - 55212163
Alignment:
| Q |
3 |
ggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagttagcgcaaga |
102 |
Q |
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| T |
55211881 |
ggatccttttagattaagatgagtcgtgataacttttagaactagccgagtcgccacattagtgctccttattctaaatatcctatcagtt-gcgcaaga |
55211979 |
T |
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| Q |
103 |
aatccaaatttccatggcatcaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactgctctgacttcgtcgaatga |
202 |
Q |
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| T |
55211980 |
aatccaaatttacatggcaacaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactactctgacttcgtcgaatga |
55212079 |
T |
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| Q |
203 |
ttcatgtgtttgaacttgaaataatttattttagaggtacaaaagttatgaaggtacatagaatctagaggtgcacaggttctg |
286 |
Q |
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| T |
55212080 |
ttcatctgtttgaacttgaaataatttattttagaggtacaaaagttatgaaggtacatagaatctagaggtacagaggttctg |
55212163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 30912007 - 30911921
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
90 |
Q |
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| T |
30912007 |
gatccttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattattctaagtatcctatca |
30911921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 36326451 - 36326375
Alignment:
| Q |
7 |
ccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatat |
83 |
Q |
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| T |
36326451 |
ccttctagattaatgtgagtcataataacttctagaactagatgagtcaccacattaatactcattattctaaatat |
36326375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 42513260 - 42513346
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
90 |
Q |
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| T |
42513260 |
gatccttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatca |
42513346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 38572409 - 38572488
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatat |
83 |
Q |
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| T |
38572409 |
gatccttttagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaatat |
38572488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 671415 - 671325
Alignment:
| Q |
3 |
ggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagtt |
93 |
Q |
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| T |
671415 |
ggatccttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttattctaaatatcctatcagtt |
671325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 8123480 - 8123394
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
90 |
Q |
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||||||||||||||||||| |||| | ||||||| |||||||| |||||| | | ||||||| |||||||||||||||||| |||| |
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| T |
8123480 |
gatccttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatca |
8123394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 18584084 - 18584170
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
90 |
Q |
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| T |
18584084 |
gatccttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca |
18584170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 13087653 - 13087573
Alignment:
| Q |
10 |
tctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
90 |
Q |
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| T |
13087653 |
tctagattaaggtgagtcataataacttctagaactagccgagtcaccacattaatgctccttattctgaatatcctatca |
13087573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 4834669 - 4834589
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatc |
84 |
Q |
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| T |
4834669 |
gatccttctagattaaggtgagtcataataacttctagaacttactgagtcaccacattcgtagtcattattctaaatatc |
4834589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 13886540 - 13886454
Alignment:
| Q |
4 |
gatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
90 |
Q |
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|||| ||||||||||||||||||| | |||| || |||||||| | ||||| | ||||||||| |||||||||||| ||||| |||| |
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| T |
13886540 |
gatctttctagattaaggtgagtcataataatttatagaactagcagagtcaccacattagtgctccttattctaactatcctatca |
13886454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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