View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_18 (Length: 272)
Name: NF4002_low_18
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 8498618 - 8498872
Alignment:
| Q |
1 |
ttatctggagtgggaatatagctaatagaaaactggtaactgtttcttggaaaa-agctttgtaagccctattctgaaggaggtttgggattaagatcac |
99 |
Q |
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| T |
8498618 |
ttatctggagtgggaatatagctaatagaaaactggtaactgtttcttggaaaaaagctttgtaagccctattctgaaggaggtttgggattaagatcac |
8498717 |
T |
|
| Q |
100 |
taattactttgaatgaagccaccaatctgaagattttatgggatctgaagaactctaatgaagattcggctttgttgttgagaagtaaagtcttcagagg |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8498718 |
taattactttgaatgaagccaccaatttgaagattttatgggatctgaagaactctaatgaagattcggctttgttgttgagaagtcaagtcttcagagg |
8498817 |
T |
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| Q |
200 |
taagagggttatcactcatcacattttttcttctctttggagtagcataaaatcc |
254 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8498818 |
taagagagttatcactcatcacattttttcttctctttggagtagcataaaatcc |
8498872 |
T |
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