View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_19 (Length: 253)
Name: NF4002_low_19
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_19 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 34641 - 34745
Alignment:
| Q |
142 |
tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga |
241 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
34641 |
tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata |
34740 |
T |
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| Q |
242 |
attat |
246 |
Q |
| |
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||||| |
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| T |
34741 |
attat |
34745 |
T |
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Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 41308 - 41415
Alignment:
| Q |
142 |
tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc |
238 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41308 |
tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc |
41407 |
T |
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| Q |
239 |
agaattat |
246 |
Q |
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| T |
41408 |
ataattat |
41415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 923706 - 923592
Alignment:
| Q |
5 |
atttttctatctaaactcttaaagaaatctaaaaa-acaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaat |
103 |
Q |
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| T |
923706 |
atttttctatctaaactcttaaagaaatctaaaaagacaccatttttcaatccaaactcttaaa-gaagaaaaacatatgattagagacacactttaa-- |
923610 |
T |
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| Q |
104 |
taatagttattgaaacata |
122 |
Q |
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|||||| ||||||||||| |
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| T |
923609 |
-aatagtgattgaaacata |
923592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 14455449 - 14455551
Alignment:
| Q |
142 |
tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga |
241 |
Q |
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||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
14455449 |
tatgaccacatatagatttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata |
14455548 |
T |
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| Q |
242 |
att |
244 |
Q |
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||| |
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| T |
14455549 |
att |
14455551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 46833222 - 46833357
Alignment:
| Q |
47 |
ttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatga |
146 |
Q |
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|||||||||| || ||||||| ||||||||||| |||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |
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| T |
46833222 |
ttttcaatcgaaactcttaaa-gaagaaaaacacatgattagagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatga |
46833315 |
T |
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| Q |
147 |
ccacttataagcttcatttataaactttgacagcaaagcatg |
188 |
Q |
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|||| |||| |||||||||||||||||| |||| ||| |||| |
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| T |
46833316 |
ccacatataggcttcatttataaacttttacagaaaaacatg |
46833357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 27446050 - 27445943
Alignment:
| Q |
142 |
tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc |
238 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27446050 |
tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc |
27445951 |
T |
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| Q |
239 |
agaattat |
246 |
Q |
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| T |
27445950 |
ataattat |
27445943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 27540909 - 27541035
Alignment:
| Q |
1 |
caccatttttctatctaaactcttaaagaaatctaaaa-aacaccatttttcaatcggaaatcttaaaagaagaaaaacatatgattagagacacacttt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| || |||| |||||||||||||| ||||||| ||||| ||||| |
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| T |
27540909 |
caccatttttctatctaaactcttaaagaactataaaacgacactatttttcaatcaaaattctt-aaagaagaaaaacacatgattaaagacatacttt |
27541007 |
T |
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| Q |
100 |
aaattaatagttattgaaacatagtaattga |
130 |
Q |
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|||| |||| ||||||||||||||||||| |
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| T |
27541008 |
aaat---tagtgattgaaacatagtaattga |
27541035 |
T |
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