View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4002_low_2 (Length: 483)

Name: NF4002_low_2
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4002_low_2
NF4002_low_2
[»] chr3 (7 HSPs)
chr3 (343-457)||(33631566-33631680)
chr3 (51-286)||(33631735-33631947)
chr3 (51-159)||(17057142-17057250)
chr3 (1-52)||(17057468-17057519)
chr3 (1-52)||(33632162-33632213)
chr3 (162-199)||(33632536-33632573)
chr3 (114-198)||(34936715-34936799)
[»] chr7 (1 HSPs)
chr7 (56-173)||(43492947-43493063)
[»] chr5 (2 HSPs)
chr5 (93-149)||(43378621-43378677)
chr5 (93-149)||(43379448-43379504)
[»] chr6 (1 HSPs)
chr6 (99-149)||(13207395-13207445)
[»] chr1 (2 HSPs)
chr1 (118-201)||(15668268-15668351)
chr1 (177-206)||(7338846-7338875)
[»] chr2 (1 HSPs)
chr2 (344-408)||(15873839-15873904)
[»] chr8 (2 HSPs)
chr8 (99-149)||(28584354-28584404)
chr8 (118-198)||(41889323-41889403)
[»] scaffold0151 (1 HSPs)
scaffold0151 (93-146)||(20792-20845)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 343 - 457
Target Start/End: Complemental strand, 33631680 - 33631566
Alignment:
Q  343 ctacacttttaagcatttgattacgtaagtttcaaaatattcttattatatttgtttcttaaactaatgcatcaagaacaccagttattttcctaataga 442  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33631680 ctacacttttaagcatttgattacgtaagtttcaaaaaattcttattatatttgtttcttaaactaatgcatcaagaacaccggttattttcctaataga 33631581  T
Q  443 aatagcagtagtagg 457  Q
    |||||||||||||||    
T  33631580 aatagcagtagtagg 33631566  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 51 - 286
Target Start/End: Complemental strand, 33631947 - 33631735
Alignment:
Q  51 cgcgaatgttgattttttattcaataaacaagtgnnnnnnnncaaacattttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaagaa 150  Q
    ||||||||||||||||||||||| ||||||||||        |||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  33631947 cgcgaatgttgattttttattcagtaaacaagtgttttttc-caaacatttttatctcaatcgttagtttcatttttgccatgtgtcacacatctaagaa 33631849  T
Q  151 gtgtacaggtctaaatagagtattgttaaatggagcaaagatggactcatattttttaagggaaccatgcaagactaattaacaaaaaattattagtgca 250  Q
    ||| |||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33631848 gtgaacaggtctaaata----------------------gatggactcatattttttaagggaaccatgcaagactaattaacaaaaaattattagtgca 33631771  T
Q  251 cgtcaatagaaagagtcatgttaaccgatacttccg 286  Q
    | ||||||||||||||||||||||||||||| ||||    
T  33631770 cctcaatagaaagagtcatgttaaccgatacctccg 33631735  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 17057250 - 17057142
Alignment:
Q  51 cgcgaatgttgatttttt-attcaataaacaagtgnnnnnnnncaaacattttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 149  Q
    |||||||||||||||||| ||||| ||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17057250 cgcgaatgttgatttttttattcagtaaacaagtgttttttc-caaaccttttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 17057152  T
Q  150 agtgtacagg 159  Q
    |||| |||||    
T  17057151 agtgaacagg 17057142  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17057519 - 17057468
Alignment:
Q  1 tgaaattgaagagtggaacaacacatatccaacaacaagagaaagaagatcg 52  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17057519 tgaaattgaagagtggaacaacacagatccaacaacaagagaaagaagatcg 17057468  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33632213 - 33632162
Alignment:
Q  1 tgaaattgaagagtggaacaacacatatccaacaacaagagaaagaagatcg 52  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  33632213 tgaaattgaagagtgcaacaacacagatccaacaacaagagaaagaagatcg 33632162  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 33632536 - 33632573
Alignment:
Q  162 taaatagagtattgttaaatggagcaaagatggactca 199  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  33632536 taaatggagtattattaaatggagcaaagatggactca 33632573  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 34936799 - 34936715
Alignment:
Q  114 ttggtttcatttttgccacgtgtcacacatctaagaagtgtacaggtctaaatagagtattgttaaatggagcaaagatggactc 198  Q
    ||||||| ||||||||||| ||||||| ||||| |||||| | |||  ||||| |||   || ||||||||||||||||| ||||    
T  34936799 ttggttttatttttgccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatgcactc 34936715  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 43492947 - 43493063
Alignment:
Q  56 atgttgattttttattcaataaacaagtgnnnnnnnncaaacattttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaagaagtgta 155  Q
    |||||||||||||||||| ||||||||||        ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  43492947 atgttgattttttattcagtaaacaagtgttttttc-caaaccttttaatctcaaccgttggtttcatttttgccatgtgtcacacatctaagaagtgaa 43493045  T
Q  156 caggtctaaatagagtat 173  Q
    ||||  ||||| ||||||    
T  43493046 caggggtaaatggagtat 43493063  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 43378677 - 43378621
Alignment:
Q  93 caaacattttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 149  Q
    ||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaaga 43378621  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 43379448 - 43379504
Alignment:
Q  93 caaacattttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 149  Q
    ||||| |||||||| ||||| ||| ||| ||||||||||| ||||||||||||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaaga 43379504  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 13207445 - 13207395
Alignment:
Q  99 ttttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 149  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  13207445 ttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaaga 13207395  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 15668268 - 15668351
Alignment:
Q  118 tttcatttttgccacgtgtcacacatctaagaagtgtacaggtctaaatagagtattgttaaatggagcaaagatggactcata 201  Q
    ||||||||||||||| ||||||||||| ||  |||| | |||  ||||| |||  || ||||||||||||||||||||||||||    
T  15668268 tttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggagcaaagatggactcata 15668351  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 7338846 - 7338875
Alignment:
Q  177 taaatggagcaaagatggactcatattttt 206  Q
    ||||||||||||||||||||||||||||||    
T  7338846 taaatggagcaaagatggactcatattttt 7338875  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 15873839 - 15873904
Alignment:
Q  344 tacacttttaagcattt-gattacgtaagtttcaaaatattcttattatatttgtttcttaaacta 408  Q
    |||||||||||| |||| ||||||  ||||||||| | |||||||||||||||||||||| |||||    
T  15873839 tacacttttaagtattttgattacacaagtttcaagaaattcttattatatttgtttctttaacta 15873904  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 28584354 - 28584404
Alignment:
Q  99 ttttaatctcaaccgttggtttcatttttgccacgtgtcacacatctaaga 149  Q
    ||||||||||  || ||||||| ||||||||||||||||||| ||||||||    
T  28584354 ttttaatctcggcccttggttttatttttgccacgtgtcacatatctaaga 28584404  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 41889403 - 41889323
Alignment:
Q  118 tttcatttttgccacgtgtcacacatctaagaagtgtacaggtctaaatagagtattgttaaatggagcaaagatggactc 198  Q
    ||||||||||||||| ||||||||||| ||  |||| | |||  ||||| |||  || ||||||||| |||||||||||||    
T  41889403 tttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggaacaaagatggactc 41889323  T

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Target: scaffold0151 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 20845 - 20792
Alignment:
Q  93 caaacattttaatctcaaccgttggtttcatttttgccacgtgtcacacatcta 146  Q
    ||||| ||||||||||| || ||||||| |||||| |||| |||||||||||||    
T  20845 caaaccttttaatctcagccattggttttatttttaccacatgtcacacatcta 20792  T

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