View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_24 (Length: 240)
Name: NF4002_low_24
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43396315 - 43396094
Alignment:
| Q |
1 |
cgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgtagtttcttcttcttccttcacaaaattcttcaccgga |
100 |
Q |
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| T |
43396315 |
cgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgtagtttcttcttcttccttcacaaaattcttcaccgga |
43396216 |
T |
|
| Q |
101 |
gctatcttctcccacgaacacgtggaagaagatatcgttctccggtgagcagattccacgaggttcctcggcggtgacagaggtaaagaatcctcactat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43396215 |
gctatcttctcccacgaacacgtggaagaagatatcgttctccggtgagcagattccacgaggttcctcggtggtgacagaggtaaagaatcctcactat |
43396116 |
T |
|
| Q |
201 |
gtggtgttctccggcttgtatt |
222 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
43396115 |
gtggtgttcgccggcttgtatt |
43396094 |
T |
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