View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_25 (Length: 236)
Name: NF4002_low_25
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 33641807 - 33641603
Alignment:
| Q |
19 |
tcatggacagtgctttgaataaggataccatagcttcaacaaatggtggatagtggttgtgtgtgtgtatttgttggtgatcaaatgtagcacaatactt |
118 |
Q |
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| T |
33641807 |
tcatggacagtgctttgaataaggataccatagcttcaacaaatggtggatagtggttgtgtgtgtgtatttgttggtgatcaaatgtagcacaatactt |
33641708 |
T |
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| Q |
119 |
gggtgtttatataggatttaatgtgtctatcccttggactggtgtaactgcaaaggagaatttaatgtgcgtaaaagttgaaagtccaaatagaaggcct |
218 |
Q |
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| T |
33641707 |
gggtgtttatataggatttaatgtgtctatcccttggactggtgtaactgcaaaggagaatttaatgtgcgtaaaagttgaaagtccaaatagaaggcct |
33641608 |
T |
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| Q |
219 |
ttgct |
223 |
Q |
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||||| |
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| T |
33641607 |
ttgct |
33641603 |
T |
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