View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4002_low_5 (Length: 465)

Name: NF4002_low_5
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4002_low_5
NF4002_low_5
[»] chr4 (11 HSPs)
chr4 (182-455)||(3746195-3746467)
chr4 (18-123)||(3746031-3746136)
chr4 (21-118)||(3751851-3751948)
chr4 (21-111)||(3781224-3781314)
chr4 (21-111)||(3762836-3762926)
chr4 (27-116)||(3776917-3777006)
chr4 (372-455)||(13538252-13538336)
chr4 (363-455)||(31351661-31351754)
chr4 (27-94)||(3767246-3767313)
chr4 (374-413)||(38415494-38415533)
chr4 (374-431)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (364-448)||(1028751-1028836)
chr8 (376-431)||(28300139-28300194)
chr8 (364-408)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (364-451)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (373-454)||(37307687-37307769)
chr7 (372-455)||(9667228-9667312)
chr7 (372-408)||(27227261-27227297)
chr7 (368-430)||(23982068-23982130)
chr7 (373-430)||(24250144-24250201)
chr7 (372-408)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (373-455)||(9737574-9737657)
chr3 (363-408)||(52910376-52910421)
chr3 (372-408)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (363-408)||(37123631-37123676)
chr2 (372-408)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 182 - 455
Target Start/End: Original strand, 3746195 - 3746467
Alignment:
Q  182 tgttgggtaggcatggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatga 281  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3746195 tgttgggtaggcatggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatga 3746293  T
Q  282 agtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggct 381  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||    
T  3746294 agtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggct 3746393  T
Q  382 agattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctg 455  Q
    ||||| | ||||||||| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746394 agatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 3746031 - 3746136
Alignment:
Q  18 aaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttcaaatga 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3746031 aaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttggggtctattgaacgaacaaaatcataagtttcttctttttcaaatga 3746130  T
Q  118 tggtga 123  Q
    ||||||    
T  3746131 tggtga 3746136  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 3751851 - 3751948
Alignment:
Q  21 agaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttcaaatgat 118  Q
    ||||||||||||||||||| |||||||| |||||||||  |||||||||  ||||||||| ||||||||||||| ||||||||| |||||| ||||||    
T  3751851 agaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttcttgtttttctaatgat 3751948  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 3781224 - 3781314
Alignment:
Q  21 agaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttc 111  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||||  | ||||| | ||||||||||||  |||| |||| ||||||    
T  3781224 agaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcgaaagtgtcttgtttttc 3781314  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 3762836 - 3762926
Alignment:
Q  21 agaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttc 111  Q
    ||||||| ||||| ||||| ||||| || |||||||||  |||||| ||  ||||||||| ||||||||||||| |||||||||| |||||    
T  3762836 agaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttc 3762926  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 3776917 - 3777006
Alignment:
Q  27 tgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttcaaatg 116  Q
    ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| ||||||||||||| | || ||||||||||| ||||    
T  3776917 tgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaaaggtatcttctttttctaatg 3777006  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  372 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 455  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 455
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  363 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 455  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 3767246 - 3767313
Alignment:
Q  27 tgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaacgaacaaaatca 94  Q
    ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| |||||||||||||    
T  3767246 tgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca 3767313  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 413
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  374 tagtggctagattcaaacacattatgtatggagaaatgga 413  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  374 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 431  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 448
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  364 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 448  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  376 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 431  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  364 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 408  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 451
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  364 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 451  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 454
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  373 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 454  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  372 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 455  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  372 tctagtggctagattcaaacacattatgtatggagaa 408  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  368 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 430  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  373 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 430  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  372 tctagtggctagattcaaacacattatgtatggagaa 408  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  373 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 455  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  363 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 408  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  372 tctagtggctagattcaaacacattatgtatggagaa 408  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  363 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 408  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  372 tctagtggctagattcaaacacattatgtatggagaa 408  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

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