View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4002_low_8 (Length: 409)
Name: NF4002_low_8
Description: NF4002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4002_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 40312098 - 40312286
Alignment:
| Q |
6 |
atttgttatttaaactacttggcagaaagtatgagtttagtccatcctaatgtacaaatatgaaaccttctgacggaactacatgttatggaactatgtc |
105 |
Q |
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| T |
40312098 |
atttgttatttaaactacttggcagaaagtatgagtttagtccatcctaatgtacaaatatgaaaccttctgacggaactacatgttatggaactatgtc |
40312197 |
T |
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| Q |
106 |
tgcattcatcaagacacataaattcttttgaaaatgtttggtaacaaataagatttcaacacataatttatcacaaacttctaatttaa |
194 |
Q |
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| T |
40312198 |
tgcattcatcaagacacataaattcttttgaaaatgtttggtaacaaataagatttcaacacataatttatcacaaacttctaatttaa |
40312286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 40312547 - 40312692
Alignment:
| Q |
190 |
tttaactacataaaatttctcattcaaaccagttaagaattcaataacctgatctttggtgtgataattgcatgcaacatgcattacttcacaattctgt |
289 |
Q |
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| T |
40312547 |
tttaactacataaaatttctcattcaaaccagttaagaattgaataacctgatctttggtgtgataattgcatgcaacatgcataacttcacaattctgt |
40312646 |
T |
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| Q |
290 |
gaaatttagctccttccacatagatttagtatttgtgaaataatcc |
335 |
Q |
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| T |
40312647 |
gaaatttagctcctcccacagagatttagtatttgtgaaataatcc |
40312692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 40312752 - 40312818
Alignment:
| Q |
331 |
aatcctaacaactttagagaacctttctttgagatcctccaacacaacaacattttcatggaaacct |
397 |
Q |
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| T |
40312752 |
aatcctaacaactttagagaacctttctttgagatcctccaacacaacaacattttcatggaaacct |
40312818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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