View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4003_high_1 (Length: 540)
Name: NF4003_high_1
Description: NF4003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4003_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 32065342 - 32065855
Alignment:
| Q |
18 |
agttaacatgaaggcatacgatacaagttaatcattgaacaaaagctaacaagaatcaatacaacaaacctcacagcctcaagatccttgccattgttgt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32065342 |
agttaacatgaaggcatacaatacaagttaatcattgaacaaaagctaacaagaatcaatacaacaaacctcacagactcaagatccttgccattgttgt |
32065441 |
T |
|
| Q |
118 |
ccaaaaccacatcaaatgcttcccctcctacaacactccctacatctgcaggatttccccatactgtactgcctccagcactcacaatttcctgaatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065442 |
ccaaaaccacatcaaatgcttcccctcctacaacactccctacatctgcaggatttccccatactgtactgcctccagcactcacaatttcctgaatatt |
32065541 |
T |
|
| Q |
218 |
tttcaaattcaacaataaattaaaccttgatgtaataatgatgatttgtaatttcacaatattgtttcaatgcaaatagcagtgtactgtagtgaaaaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065542 |
tttcaaattcaacaataaattaaaccttgatgtaataatgatgatctgtaatttcacaatattgtttcaatgcaaatagcagtgtactgtagtgaaaaga |
32065641 |
T |
|
| Q |
318 |
acaattctttcggaatgagtgtgagaatgagataaagatcattaactgagaatctgttaaaaggaggtttcttcatcttatctgagctttcatcaccaac |
417 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065642 |
aaaattctttcggaatgagtttgagaatgagataaagatcattaactgagaatctgttaaaaggaggtttcttcatcttatctgagctttcatcaccaac |
32065741 |
T |
|
| Q |
418 |
agtgagaatggtgacagagtgtccagcaccaagtagctcttttgcaaagtagaagccaatcacagcatgtccaccactattggtatttatgattagcacc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065742 |
agtgagaatggtgacagagtgtccagcaccaagtagctcttttgcaaagtagaagccaatcacagcatgtccaccactattggtatttatgattagcacc |
32065841 |
T |
|
| Q |
518 |
ttcttcttctctgc |
531 |
Q |
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|||||||||||||| |
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| T |
32065842 |
ttcttcttctctgc |
32065855 |
T |
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