View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4003_high_2 (Length: 275)

Name: NF4003_high_2
Description: NF4003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4003_high_2
NF4003_high_2
[»] chr7 (7 HSPs)
chr7 (154-263)||(26417942-26418051)
chr7 (4-50)||(25272597-25272644)
chr7 (1-45)||(27866552-27866597)
chr7 (1-45)||(33465054-33465099)
chr7 (1-45)||(37848635-37848680)
chr7 (1-48)||(40108132-40108180)
chr7 (9-48)||(48522153-48522193)
[»] chr3 (6 HSPs)
chr3 (1-49)||(29846906-29846955)
chr3 (1-45)||(29057659-29057704)
chr3 (1-47)||(50745558-50745605)
chr3 (1-46)||(35368621-35368667)
chr3 (1-46)||(48490528-48490574)
chr3 (5-48)||(48117344-48117388)
[»] chr8 (8 HSPs)
chr8 (1-47)||(13924020-13924067)
chr8 (9-50)||(22203249-22203291)
chr8 (1-45)||(6243045-6243090)
chr8 (1-45)||(36675336-36675381)
chr8 (1-53)||(37392143-37392196)
chr8 (1-45)||(41776186-41776231)
chr8 (9-48)||(35701861-35701901)
chr8 (2-45)||(37471654-37471698)
[»] chr5 (8 HSPs)
chr5 (1-47)||(12203156-12203203)
chr5 (3-45)||(38387610-38387653)
chr5 (1-51)||(43153075-43153126)
chr5 (9-50)||(3031829-3031871)
chr5 (1-50)||(32732133-32732183)
chr5 (9-49)||(18729323-18729364)
chr5 (1-40)||(7080546-7080586)
chr5 (4-47)||(38919861-38919905)
[»] chr1 (4 HSPs)
chr1 (1-50)||(30414870-30414920)
chr1 (5-45)||(16252778-16252819)
chr1 (1-45)||(35030777-35030822)
chr1 (1-40)||(50460727-50460767)
[»] chr4 (6 HSPs)
chr4 (1-45)||(24310536-24310581)
chr4 (1-48)||(1868908-1868956)
chr4 (1-47)||(31413801-31413848)
chr4 (1-46)||(9827998-9828044)
chr4 (1-45)||(7795025-7795070)
chr4 (1-40)||(54848154-54848194)
[»] chr6 (5 HSPs)
chr6 (3-50)||(17442828-17442876)
chr6 (1-47)||(2165315-2165362)
chr6 (1-47)||(2176948-2176995)
chr6 (5-45)||(16121163-16121204)
chr6 (1-49)||(25567505-25567554)
[»] chr2 (6 HSPs)
chr2 (1-40)||(11828835-11828875)
chr2 (9-49)||(12208438-12208479)
chr2 (1-45)||(24727426-24727471)
chr2 (5-45)||(27538935-27538976)
chr2 (1-45)||(45202147-45202192)
chr2 (3-46)||(22296146-22296190)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-47)||(17047-17094)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-51)||(31615-31666)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 26417942 - 26418051
Alignment:
Q  154 aaatgtctaaattattggattgtcatgatcctctttcttccatgatttttctctcaaattattgaagatgaatttctaaaatgttcctctcttttctaag 253  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26417942 aaatgtctaaattattggattgtcatgatcctctttcctccatgatttttctctcaaattattgaaggtgaatttctaaaatgttcctctcttttctaag 26418041  T
Q  254 gtgaattatg 263  Q
    ||||||||||    
T  26418042 gtgaattatg 26418051  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 25272644 - 25272597
Alignment:
Q  4 gagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaa 50  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  25272644 gagagaaagttgtacaaaaatggttgtacaaatatcatttctcataaa 25272597  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27866552 - 27866597
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  27866552 tgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 27866597  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33465054 - 33465099
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  33465054 tgagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 33465099  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37848635 - 37848680
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  37848635 tgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37848680  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40108180 - 40108132
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctta 48  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| |||||||    
T  40108180 tgagagagaaagttgtataaaaatggttgtacaaacatcatttctctta 40108132  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 48522193 - 48522153
Alignment:
Q  9 aaagttgtacaaaaatggttg-acaaatatcatctctctta 48  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  48522193 aaagttgtacaaaaatggttgtacaaatatcatttctctta 48522153  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29846906 - 29846955
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaa 49  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  29846906 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctcttaa 29846955  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29057704 - 29057659
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  29057704 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50745605 - 50745558
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  50745605 tgagagagaaagttgtacaaaaatgattgtacaaatatcatttctctt 50745558  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35368667 - 35368621
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctct 46  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  35368667 tgagagagaaagttgtacaaaaatagttgtacaaatatcatttctct 35368621  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48490528 - 48490574
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctct 46  Q
    |||||||||||||||||||||| |||||| ||||||||||| |||||    
T  48490528 tgagagagaaagttgtacaaaagtggttgtacaaatatcatttctct 48490574  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 48117388 - 48117344
Alignment:
Q  5 agagaaagttgtacaaaaatggttg-acaaatatcatctctctta 48  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||    
T  48117388 agagaaagttgtacaaaaatggttgtataaatatcatttctctta 48117344  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13924067 - 13924020
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  13924067 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctctt 13924020  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 22203249 - 22203291
Alignment:
Q  9 aaagttgtacaaaaatggttg-acaaatatcatctctcttaaa 50  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  22203249 aaagttgtacaaaaatggttgtacaaatatcatttctcttaaa 22203291  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6243090 - 6243045
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  6243090 tgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 6243045  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36675381 - 36675336
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  36675381 tgagagaaaaagttgtacaaaaatggttgtacaaatatcatttctc 36675336  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37392143 - 37392196
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaagtt 53  Q
    ||||||||||||||||  ||||||||||| ||||||||||| ||||||| ||||    
T  37392143 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctcttatagtt 37392196  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41776231 - 41776186
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||    
T  41776231 tgagagagaaagttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 35701861 - 35701901
Alignment:
Q  9 aaagttgtacaaaaatggttg-acaaatatcatctctctta 48  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  35701861 aaagttgtacaaaaatggttgtacaaatatcatttctctta 35701901  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 37471698 - 37471654
Alignment:
Q  2 gagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||    
T  37471698 gagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12203203 - 12203156
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  12203203 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctctt 12203156  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 38387653 - 38387610
Alignment:
Q  3 agagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  38387653 agagagaaagttgtacaaaaatggttgtacaaatatcatttctc 38387610  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43153075 - 43153126
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaag 51  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||| ||||    
T  43153075 tgagagagaaagttgtacaaaaattgttgtacaaatatcatttctctaaaag 43153126  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 3031871 - 3031829
Alignment:
Q  9 aaagttgtacaaaaatggttg-acaaatatcatctctcttaaa 50  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  3031871 aaagttgtacaaaaatggttgtacaaatatcatttctcttaaa 3031829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32732133 - 32732183
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaa 50  Q
    ||||||||||||||||||||||||| ||| |||||||| || |||||||||    
T  32732133 tgagagagaaagttgtacaaaaatgattgtacaaatataatttctcttaaa 32732183  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 18729323 - 18729364
Alignment:
Q  9 aaagttgtacaaaaatggttg-acaaatatcatctctcttaa 49  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  18729323 aaagttgtacaaaaatggttgtacaaatatcatttctcttaa 18729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7080586 - 7080546
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcat 40  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  7080586 tgagagagaaagttgtacaaaaatgattgtacaaatatcat 7080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 38919905 - 38919861
Alignment:
Q  4 gagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||    
T  38919905 gagagaaagttgtacaaaaatagttgtacaaatatcatttctctt 38919861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30414920 - 30414870
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaa 50  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||||||||    
T  30414920 tgagagagaaggttgtacaaaaatggttgtacaaatatcatttctcttaaa 30414870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 16252778 - 16252819
Alignment:
Q  5 agagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  16252778 agagaaagttgtacaaaaatggttgtacaaatatcatttctc 16252819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35030777 - 35030822
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  35030777 tgagagagaaagttgtacaaaaatggttgtacaaataacatttctc 35030822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50460727 - 50460767
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcat 40  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  50460727 tgagaaagaaagttgtacaaaaatggttgtacaaatatcat 50460767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24310536 - 24310581
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  24310536 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 24310581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1868908 - 1868956
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctta 48  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  1868908 tgagatagaaagttgtacaaaaatggttgtacaaatatcatttctctta 1868956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31413801 - 31413848
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  31413801 tgagagagaaagttgtacaaaaatagttgtacaaatatcatttctctt 31413848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9827998 - 9828044
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctct 46  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||    
T  9827998 tgagagagaaagttgtactaaaatggttgtacaaatatcatttctct 9828044  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7795070 - 7795025
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  7795070 tgagaaagaaagttgtacaaaaatggttgtacaaatatcatttctc 7795025  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 54848194 - 54848154
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcat 40  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  54848194 tgagagagaaggttgtacaaaaatggttgtacaaatatcat 54848154  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 17442876 - 17442828
Alignment:
Q  3 agagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaa 50  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||    
T  17442876 agagagaaagttgtacaaaaatggttgtacaaatattatttctcttaaa 17442828  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2165315 - 2165362
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  2165315 tgagagataaagttgtacaaaaatggttgtacaaatatcatttctctt 2165362  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2176948 - 2176995
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  2176948 tgagagataaagttgtacaaaaatggttgtacaaatatcatttctctt 2176995  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 16121204 - 16121163
Alignment:
Q  5 agagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  16121204 agagaaagttgtacaaaaatggttgtacaaatatcatttctc 16121163  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25567505 - 25567554
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaa 49  Q
    ||||||| ||||||||||||||||||||| || |||||||| ||||||||    
T  25567505 tgagagataaagttgtacaaaaatggttgtacgaatatcatttctcttaa 25567554  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11828835 - 11828875
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcat 40  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  11828835 tgagagagaaagttgtacaaaaatggttgtacaaatatcat 11828875  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 12208479 - 12208438
Alignment:
Q  9 aaagttgtacaaaaatggttg-acaaatatcatctctcttaa 49  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  12208479 aaagttgtacaaaaatggttgtacaaatatcatttctcttaa 12208438  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24727471 - 24727426
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||    
T  24727471 tgagagagaaagttgtaccaaaatggttgtacaaatatcatttctc 24727426  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 27538935 - 27538976
Alignment:
Q  5 agagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  27538935 agagaaagttgtacaaaaatggttgtacaaatatcatttctc 27538976  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45202147 - 45202192
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctc 45  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  45202147 tgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctc 45202192  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 22296146 - 22296190
Alignment:
Q  3 agagagaaagttgtacaaaaatggttg-acaaatatcatctctct 46  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||    
T  22296146 agagagaaaattgtacaaaaatggttgtacaaatatcatttctct 22296190  T

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Target: scaffold0286 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17094 - 17047
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctctt 47  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  17094 tgagagataaagttgtacaaaaatggttgtacaaatatcatttctctt 17047  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31615 - 31666
Alignment:
Q  1 tgagagagaaagttgtacaaaaatggttg-acaaatatcatctctcttaaag 51  Q
    ||||||||||||||||  ||||||||||| ||||||||||| ||||||||||    
T  31615 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctcttaaag 31666  T

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