View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4003_low_1 (Length: 550)
Name: NF4003_low_1
Description: NF4003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4003_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 6153454 - 6153972
Alignment:
| Q |
17 |
acaagatcatattcaattgaaaattataaattaaattaacggacaggtaatgaaggcggggctgagagaggaggaaatctcagagtctatccagaaagaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6153454 |
acaagatcatattcaattgaaaattataaataaaattaacggacaggtaatgaaggcggggctgagagaggaggaaatctcagagtctatccagaaagaa |
6153553 |
T |
|
| Q |
117 |
acttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcatttattgagtttaa |
216 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6153554 |
acttaccagcctaacattaaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcatttattgagtttaa |
6153653 |
T |
|
| Q |
217 |
tcaacatattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattgga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6153654 |
tcaacatattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattgga |
6153753 |
T |
|
| Q |
317 |
agacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggagatagctctga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
6153754 |
agacttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtcaagaatgtttgtccagtctgtaaggagatagctctga |
6153853 |
T |
|
| Q |
417 |
ggatttatgatgaagatgaataattgtttacttgagtggagattgttggtcttttaagtgtgagttaaaaatctcgcattaaattgaaaaatagac-atc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| || |
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|
| T |
6153854 |
ggatttatgatgaagatgaataattgtttacttgagtggagattgttggtgttttaagtatgagttaaaagtctcgcattgaattgaaaaatagacggtc |
6153953 |
T |
|
| Q |
516 |
catatataaatgtgttatt |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6153954 |
gatatataaatgtgttatt |
6153972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 225 - 403
Target Start/End: Complemental strand, 33800655 - 33800483
Alignment:
| Q |
225 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
324 |
Q |
| |
|
||||||||||||||| || |||||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
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|
| T |
33800655 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagacttga |
33800556 |
T |
|
| Q |
325 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
403 |
Q |
| |
|
||| | |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
33800555 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33800483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 225 - 403
Target Start/End: Complemental strand, 33729538 - 33729366
Alignment:
| Q |
225 |
ttaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagacttga |
324 |
Q |
| |
|
||||||||||||||| || |||||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
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|
| T |
33729538 |
ttaaaatcctaatacttgagcatattcaagtgtcataacccctcttgttttatgtttattaggaagattttattgatggggagtgtattgggagatttga |
33729439 |
T |
|
| Q |
325 |
ttgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
403 |
Q |
| |
|
||| | |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
33729438 |
ttg------caatcacatatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaag |
33729366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 33801223 - 33801062
Alignment:
| Q |
21 |
gatcatattcaattgaaaattataaattaaattaacggacaggt-aatgaaggcggggctgagagaggaggaaat-ctcagagtctatccagaaagaaac |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |||| | ||||| || ||||||| |||||||||||| |||| || ||||||| ||||||| |
|
|
| T |
33801223 |
gatcatattcaattgaaaatgataaatttaattaacgtacagatgaatga-ggtggggctggaagaggaggaaattctcat-gtatatccagcaagaaac |
33801126 |
T |
|
| Q |
119 |
ttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33801125 |
ttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33801062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 222 - 403
Target Start/End: Original strand, 6128226 - 6128402
Alignment:
| Q |
222 |
atattaaaatcctaatacatgcgcatattcaaatctcataaccc-ctattattttatgtttattaggaagattatattgatggggagcgtattggaagac |
320 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||| | ||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6128226 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaatttttttttgtttattaggaagattatattgatggggagcatattggaagac |
6128325 |
T |
|
| Q |
321 |
ttgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
403 |
Q |
| |
|
|| | || ||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
6128326 |
ttcactg----cac--tcacatatatcatcttgattgcatcaaacaatggtttgaggtgaagaatgcttgtccattctgtaag |
6128402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 222 - 403
Target Start/End: Original strand, 6147422 - 6147597
Alignment:
| Q |
222 |
atattaaaatcctaatacatgcgcatattcaaatctcataacccctattattttatgtttattaggaagattatattgatggggagcgtattggaagact |
321 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||| | | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6147422 |
atattaaaatcctaatacatgagcatattcaagtatcataaccctcaattttttttgtttattaggaagattatattgatggggagcatattggaagact |
6147521 |
T |
|
| Q |
322 |
tgattgtattcaccgtcacatatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaag |
403 |
Q |
| |
|
| |||||| ||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6147522 |
taattgta------ctcacacatatcattttgattgcatcgaacaatggttgggggtgaagaatgtttgtccagtctgtaag |
6147597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 33730107 - 33729946
Alignment:
| Q |
21 |
gatcatattcaattgaaaattataaattaaattaacggacaggt-aatgaaggcggggctgagagaggaggaaat-ctcagagtctatccagaaagaaac |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |||| | ||||| || ||||||| |||||||||||| |||| || |||||| ||||||| |
|
|
| T |
33730107 |
gatcatattcaattgaaaatgataaatttaattaacgtacagatgaatga-ggtggggctggaagaggaggaaattctcat-gtacatccagcaagaaac |
33730010 |
T |
|
| Q |
119 |
ttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33730009 |
ttaccagcctaatactgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaag |
33729946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 6146940 - 6147129
Alignment:
| Q |
17 |
acaagatcatattcaattgaaaattataaattaaattaacggacaggtaatgaaggcggggctgagagaggaggaaatctcagagtctatccagaaagaa |
116 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| |||||| ||| | || |||||||||||||||||| || || ||| || || |
|
|
| T |
6146940 |
acaagatcatattcaatagaaaatgataaattaaattaatatacaggtgatggtttggagggtgagagaggaggaaatcttcttgtacatacagcaaaaa |
6147039 |
T |
|
| Q |
117 |
acttaccagcctaatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattta |
206 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6147040 |
acataccggcctaatattgaggaaacaagcacaatgaatcaaatatgcaccatatgtcaggtgaggtcaactacatgtttcattcattta |
6147129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 6127867 - 6127943
Alignment:
| Q |
129 |
aatattgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcattt |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6127867 |
aatactgaggaaacaagcacaatgaatcaaacatgcaccatatgtcaggtgaggtcaactacatgtttcattcattt |
6127943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 6121040 - 6121114
Alignment:
| Q |
341 |
atatatcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctgtaaggagatagctctg |
415 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6121040 |
atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctg |
6121114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 6140369 - 6140440
Alignment:
| Q |
133 |
ttgaggaaacaagcacaatgaatcaaacttgcaccatatgtcaggtgaagtcaactacatgtttcattcatt |
204 |
Q |
| |
|
||||||||||||| || ||||||||| || |||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
6140369 |
ttgaggaaacaagtactcagaatcaaacatgtaccatatgccaggtgaggccaactacatgtttcattcatt |
6140440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 9886570 - 9886623
Alignment:
| Q |
346 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtccagtctg |
399 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |||||| |||| |
|
|
| T |
9886570 |
tcatcttgactgcatcaaacaatggttggagttgaagaatgtctgtccaatctg |
9886623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 9884863 - 9884815
Alignment:
| Q |
346 |
tcatcttgactgcatcagccaatggttggaggtgaagaatgtttgtcca |
394 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| | |||||| |
|
|
| T |
9884863 |
tcatcttgactgcatcaaacaatggttggagttgaagaatttatgtcca |
9884815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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