View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4003_low_5 (Length: 213)

Name: NF4003_low_5
Description: NF4003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4003_low_5
NF4003_low_5
[»] chr3 (14 HSPs)
chr3 (1-195)||(5692019-5692216)
chr3 (1-111)||(5677879-5677989)
chr3 (1-195)||(5791552-5791746)
chr3 (1-111)||(5668385-5668495)
chr3 (1-111)||(5743492-5743602)
chr3 (1-111)||(5780451-5780561)
chr3 (107-195)||(5668271-5668362)
chr3 (107-195)||(5677765-5677856)
chr3 (107-195)||(5743381-5743472)
chr3 (107-195)||(5780340-5780431)
chr3 (107-195)||(5751063-5751154)
chr3 (107-195)||(5788022-5788113)
chr3 (1-101)||(5751187-5751287)
chr3 (1-101)||(5788146-5788246)
[»] chr8 (1 HSPs)
chr8 (88-169)||(41490844-41490928)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 5692216 - 5692019
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5692216 ctcacaaaggcgacgcagcttcttgttttccatcgtcagaaaaacatatctgcatatctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 5692117  T
Q  101 agttacacttgtgaaagaccaaatagaacatatggtagctgatgt---caaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||  ||||||| ||||||  |||||||||    
T  5692116 agttacacttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataaaaagaatcttcaacatcctgagcatcaacgtgtttcctg 5692019  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5677989 - 5677879
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || |||||||||| |||||| |||||| |||||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||    
T  5677989 ctcacaaatgccacacagcttcatgtttttcatcgttagaaaaacatatctgcatctctcgtgacttgaaaagtgtgggacttgatgttttaatcaaaga 5677890  T
Q  101 agttacacttg 111  Q
    |||||||||||    
T  5677889 agttacacttg 5677879  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 5791746 - 5791552
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || |||||  |||||||||| || ||||||||| |||||||||||  |||| ||||||||| || ||||||||||||||||||||||||||    
T  5791746 ctcacaaacgccacacaatttcttgtttttcaccgtcagaaacacatatctgcatatctcttgacttgaagagtgtgggacttgatgttttaatcaaaga 5791647  T
Q  101 agttacacttgtgaaagaccaaatagaacatatggtagctgatgt---caaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    | | ||||| ||    |||||||||||||||| |||||||||||    | |||||||||||||||||||||  ||||||| ||| ||| |||||||||    
T  5791646 aatcacactcgtt---gaccaaatagaacatacggtagctgatgatgacgaagaaataaaaagaatcttcaacatcctgagcatgaaagtgtttcctg 5791552  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5668495 - 5668385
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || |||||||||| |||||| |||||| |||| ||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||    
T  5668495 ctcacaaacgccacacagcttcatgtttttcatcgttagaataacatatctgcatctctcgtgacttgaaaagtgtgggacttgatgttttaatcaaaga 5668396  T
Q  101 agttacacttg 111  Q
    |||||||||||    
T  5668395 agttacacttg 5668385  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5743602 - 5743492
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || ||||| ||||||||||| || |  |||||| |||||||||||  | || |||||||||||| ||||||||||||||||||||||||||    
T  5743602 ctcacaaacgccacacaacttcttgtttttcaccaccagaaacacatatctgcatatttcttgacttgaaaagagtgggacttgatgttttaatcaaaga 5743503  T
Q  101 agttacacttg 111  Q
    | | |||||||    
T  5743502 aatcacacttg 5743492  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5780561 - 5780451
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || ||||| ||||||||||| || |  |||||| |||||||||||  | || |||||||||||| ||||||||||||||||||||||||||    
T  5780561 ctcacaaacgccacacaacttcttgtttttcaccaccagaaacacatatctgcatatttcttgacttgaaaagagtgggacttgatgttttaatcaaaga 5780462  T
Q  101 agttacacttg 111  Q
    | | |||||||    
T  5780461 aatcacacttg 5780451  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 5668362 - 5668271
Alignment:
Q  107 acttgtgaaagaccaaatagaacatatggtagctgatg---tcaaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    ||||||||||||||||||||||||||||||||||||||   ||   |||||||||||||||||||  ||||||| ||||||| |||||||||    
T  5668362 acttgtgaaagaccaaatagaacatatggtagctgatgatgtcgtggaaataaaaagaatcttcaacatcctgagcatcaaactgtttcctg 5668271  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 5677856 - 5677765
Alignment:
Q  107 acttgtgaaagaccaaatagaacatatggtagct---gatgtcaaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    ||||||||||||||||||||||||||||||||||   ||||||  |||||| |||||||||||||  ||||||| ||||||| |||||||||    
T  5677856 acttgtgaaagaccaaatagaacatatggtagctgatgatgtcgtagaaatgaaaagaatcttcaacatcctgagcatcaaactgtttcctg 5677765  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 5743472 - 5743381
Alignment:
Q  107 acttgtgaaagaccaaatagaacatatggtagctgatgt---caaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    ||||||||||||||||||||||||||||||||||||||    | ||||||||| |||||||||||  ||||||| ||||||| |||||||||    
T  5743472 acttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataagaagaatcttcaacatcctgagcatcaaagtgtttcctg 5743381  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 5780431 - 5780340
Alignment:
Q  107 acttgtgaaagaccaaatagaacatatggtagctgatgt---caaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    ||||||||||||||||||||||||||||||||||||||    | ||||||||| |||||||||||  ||||||| ||||||| |||||||||    
T  5780431 acttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataagaagaatcttcaacatcctgagcatcaaagtgtttcctg 5780340  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 5751154 - 5751063
Alignment:
Q  107 acttgtgaaagaccaaatagaacatatggtagctgatgt---caaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    |||||||| ||||||||||||||| || ||||||||||    | |||||||||||||||||||||  || |||| ||||||||| |||||||    
T  5751154 acttgtgacagaccaaatagaacacatagtagctgatgatgacgaagaaataaaaagaatcttcaacatgctgagcatcaaattatttcctg 5751063  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 5788113 - 5788022
Alignment:
Q  107 acttgtgaaagaccaaatagaacatatggtagctgatgt---caaagaaataaaaagaatcttcattatcctgaacatcaaattgtttcctg 195  Q
    |||||||| ||||||||||||||| || ||||||||||    | |||||||||||||||||||||  || |||| ||||||||| |||||||    
T  5788113 acttgtgacagaccaaatagaacacatagtagctgatgatgacgaagaaataaaaagaatcttcaacatgctgagcatcaaattatttcctg 5788022  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5751287 - 5751187
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || ||||| ||||||| | | || ||||| ||| |||||||| ||   |||  ||||| |||||| |||||||||||||||||||||||||    
T  5751287 ctcacaaacgccacacaacttcttgatgttcaccgtcataaacacatatcttcatacctcaggacttcaaaaggttgggacttgatgttttaatcaaaga 5751188  T
Q  101 a 101  Q
    |    
T  5751187 a 5751187  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5788246 - 5788146
Alignment:
Q  1 ctcacaaaggcgacacagcttcttgttttccatcgtcagaaaaacatatctgcaattctcctgacttgaaaagggtgggacttgatgttttaatcaaaga 100  Q
    |||||||| || ||||| ||||||| | | || ||||| ||| |||||||| ||   |||  ||||| |||||| |||||||||||||||||||||||||    
T  5788246 ctcacaaacgccacacaacttcttgatgttcaccgtcataaacacatatcttcatacctcaggacttcaaaaggttgggacttgatgttttaatcaaaga 5788147  T
Q  101 a 101  Q
    |    
T  5788146 a 5788146  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 41490844 - 41490928
Alignment:
Q  88 ttttaatcaaagaagttacacttgtgaaagaccaaatagaacatatggtagctgatg-tca--aagaaataaaaagaatcttcat 169  Q
    |||||||||||||| |||||||||| |  ||||||||| |||| ||||||| ||||| | |  ||||||||||||| ||||||||    
T  41490844 ttttaatcaaagaaattacacttgtaattgaccaaataaaacacatggtagatgatgatgatgaagaaataaaaagcatcttcat 41490928  T

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