View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4003_low_6 (Length: 201)
Name: NF4003_low_6
Description: NF4003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4003_low_6 |
 | |
|
| [»] scaffold0598 (2 HSPs) |
| | |
|
| [»] scaffold0387 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0598 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0598
Description:
Target: scaffold0598; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 4381 - 4492
Alignment:
| Q |
77 |
aaaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaataatatgtgcagattaaacatcaatagacccgttgaacatc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4381 |
aaaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaatcatatgtgcagattaaacatcaatagacccgttgaacatc |
4480 |
T |
|
| Q |
177 |
ataaccctatgc |
188 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4481 |
ataaccctatgc |
4492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0598; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 4283 - 4316
Alignment:
| Q |
10 |
catcatcaaataaaaatgttgtttcattcccgac |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4283 |
catcatcaaataaaaatgttgtttcattcccgac |
4316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 34467755 - 34467863
Alignment:
| Q |
78 |
aaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaataatatgtgcagattaaacatcaatagacccgttgaacatca |
177 |
Q |
| |
|
||||||||||||| | | ||| ||||||| ||||||||||||||||| |||||| ||| |||| ||||||||||| |||| |||||||||||| || |
|
|
| T |
34467755 |
aaaatataatcaccttctaaaaatctgcacttacttgttttctaaaa-aaatcatcaatcatatatgcagattaaaacccaatgaacccgttgaacaaca |
34467853 |
T |
|
| Q |
178 |
taaccctatg |
187 |
Q |
| |
|
|| ||||||| |
|
|
| T |
34467854 |
tagccctatg |
34467863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 41439332 - 41439438
Alignment:
| Q |
77 |
aaaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaataatatgtgcagattaaacatcaatagacccgttgaacatc |
176 |
Q |
| |
|
|||||||||||||| | | ||| ||||||| |||||| ||||||||||||| | ||| |||| ||||||||||| | |||| |||||||||||| | |
|
|
| T |
41439332 |
aaaaatataatcaccttctaaaaatctgcacttacttattttctaaaatca----tcaatcatatatgcagattaaaaaccaatgaacccgttgaacaac |
41439427 |
T |
|
| Q |
177 |
ataaccctatg |
187 |
Q |
| |
|
||||||||||| |
|
|
| T |
41439428 |
ataaccctatg |
41439438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 20442206 - 20442312
Alignment:
| Q |
77 |
aaaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaataatatgtgcagattaaacatcaatagacccgttgaacatc |
176 |
Q |
| |
|
|||||||||||||| | | ||| ||||||| |||||| |||||||| |||||| ||| |||| ||||||||||| | |||| ||||| |||||| | |
|
|
| T |
20442206 |
aaaaatataatcaccttctaaaaatctgcacttacttattttctaa----aatcatcaatcatatatgcagattaaaaaccaatgaacccggtgaacaac |
20442301 |
T |
|
| Q |
177 |
ataaccctatg |
187 |
Q |
| |
|
||||||||||| |
|
|
| T |
20442302 |
ataaccctatg |
20442312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0387 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0387
Description:
Target: scaffold0387; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 3775 - 3669
Alignment:
| Q |
77 |
aaaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaataatatgtgcagattaaacatcaatagacccgttgaacatc |
176 |
Q |
| |
|
||||||||||| || | | ||| |||||||||||||| ||||||||| ||||| ||| |||||||||||||||| | |||| ||| |||||||| | |
|
|
| T |
3775 |
aaaaatataataaccttcgaaaaatctgcatttacttattttctaaa----atcatcaatcatatgtgcagattaaaaaccaatgaacctgttgaacaac |
3680 |
T |
|
| Q |
177 |
ataaccctatg |
187 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3679 |
atcaccctatg |
3669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 16288392 - 16288286
Alignment:
| Q |
77 |
aaaaatataatcacttccaaaatatctgcatttacttgttttctaaaatcaatcataaataatatgtgcagattaaacatcaatagacccgttgaacatc |
176 |
Q |
| |
|
|||||||||||||| | | ||| ||||||| |||||| ||||||||| ||||| ||| |||| ||||||||||| | ||| |||||||||||| | |
|
|
| T |
16288392 |
aaaaatataatcaccttctaaaaatctgcacttacttattttctaaa----atcatcaatcatatatgcagattaaaaacaaatgaacccgttgaacaac |
16288297 |
T |
|
| Q |
177 |
ataaccctatg |
187 |
Q |
| |
|
||||||||||| |
|
|
| T |
16288296 |
ataaccctatg |
16288286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University