View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_12 (Length: 526)
Name: NF4005_high_12
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 4387161 - 4386666
Alignment:
| Q |
18 |
accaatggcatcggaatggcatgaatcacagccataatataaggtaccaattagtcacaattatagagaaacgtaccgtgatacacataaccatgtcccc |
117 |
Q |
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| T |
4387161 |
accaatggcatcggaatggcatgaatcacagccataatataaggtaccaattagtcacaattatagagaaacgtaccgtgatacacataaccatgtcccc |
4387062 |
T |
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| Q |
118 |
atgattcttggctgcacacacatgtgagtttccttttaaaaagacgaatatataagccaaaccatacccnnnnnnnnn-tgatgctctctactgaatcac |
216 |
Q |
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| T |
4387061 |
atgattcttggctgcacacacatgtgagtttccttttaaaaagacgaatatataagccaaaccatacccaaaaaaaaaatgatgctctctactgaatcac |
4386962 |
T |
|
| Q |
217 |
agctatatgtcttagcaaacttaattatatatatattggtgaattatttttatatctttgttttaaatttgatccacttggcatatcaccatttccatgt |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4386961 |
agctatatgtcttagcaaagttaattatatatatattggtgaattatttttatatctttgttttaaatttgatccacttggcatatcaccatttccatgt |
4386862 |
T |
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| Q |
317 |
gatatattcttagcttttcttcatccttatcaccagccaaacataatcatacttatgtggcctaaaccaaacttaaattggtcaagtttagattactacc |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4386861 |
gatatattcttagcttttcttcatccttatca----ccaaacataatcatacttatgtggccttaaccaaacttaaattggtcaagtttagattactacc |
4386766 |
T |
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| Q |
417 |
aagtgtaaagcatgttataagatgtaaagtcctaactagagattggtagaaagtgaagtgttgttgaggtttgatataaagttacattacctgacctatg |
516 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4386765 |
aagtgtaaatcatgttataagatgtaaagtcctaactagagagtggtggaaagtgaagtgttgttgaggtttgatataaagttacattacctgacctatg |
4386666 |
T |
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