View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_13 (Length: 479)
Name: NF4005_high_13
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 32648025 - 32648326
Alignment:
| Q |
18 |
attccaagcttcaaactttctcatgtggttatgtatttataactatgaagcacttacacaaacacggccacacaataatttggaaattgaaagaaattaa |
117 |
Q |
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| T |
32648025 |
attccaagcttcaaactttctcatgtggttatgtatttataactatgaagcacttacacaaacacggccacacaataatttggaaattgaaagaaattaa |
32648124 |
T |
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| Q |
118 |
tgcaacgtatgtgttggtatcatttcggtgttacgtgtgttagaactaagttggttcaaatacgatatttcattgttgatgttatgataacaaaacaaaa |
217 |
Q |
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| T |
32648125 |
tgtaacgtatgtgttggtatcatttcggtgctacgtgtgttagaactaagttggttcaaatacgatatttcattgttgatgttatgataacaaaacaaaa |
32648224 |
T |
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| Q |
218 |
gacaatttgtctattaattgtgtgtctcaatgtgcaggattaaagttgataactaagatatattaatgactaagagtccagttaggaaatctaagtatta |
317 |
Q |
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| T |
32648225 |
gacaatttgtctattaattgtgtgtctcaatgtgcaggattaaagttgataactaagatatattaatgactaagagtccagttaggaaatctaagtatta |
32648324 |
T |
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| Q |
318 |
tt |
319 |
Q |
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| T |
32648325 |
tt |
32648326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 336 - 469
Target Start/End: Original strand, 32648317 - 32648445
Alignment:
| Q |
336 |
aagtcttattataaaataatgaacaatcaatcatgtttactaatagagaaatatgatttaattaattaagaagattcttgataaccttattcagcgtgaa |
435 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32648317 |
aagtattattataaaataatgaacaatcaatcatgtttactaatagagaa-tatgatttaa----ttaagaagattcttgataaccttattcagcgtgaa |
32648411 |
T |
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| Q |
436 |
aaatgtattgataaatcagaatatctcacctatg |
469 |
Q |
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| T |
32648412 |
aaatgtattgataaatcagaatatctcacctatg |
32648445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 32652089 - 32652205
Alignment:
| Q |
159 |
agaactaagttggttcaaatacgatatttcattgttgatgtt---atgataacaaaacaaa-agacaatttgtctattaattgtgtgtctcaatgtgcag |
254 |
Q |
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| T |
32652089 |
agaaccaagttgattaaaatacgatctctcattgttgatgttttgatgataacaaaacaaataaataatttgtctgctaaccgtgtgtctcaatgtgcag |
32652188 |
T |
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| Q |
255 |
gattaaagttgataact |
271 |
Q |
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| T |
32652189 |
gattaaaattgataact |
32652205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 32651913 - 32651952
Alignment:
| Q |
18 |
attccaagcttcaaactttctcatgtggttatgtatttat |
57 |
Q |
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| T |
32651913 |
attccaagcttcaaactttcccatgtggttatgtatttat |
32651952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 32652282 - 32652351
Alignment:
| Q |
316 |
tattcagctgaataatcacaaagtcttattataaaata---atgaacaatcaatcatgtttactaatagag |
383 |
Q |
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| T |
32652282 |
tattcagttgaataatcacaaa-tattattataaactattaatgaacaatcaatcatgtttgctaatagag |
32652351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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