View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_17 (Length: 426)
Name: NF4005_high_17
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 31061585 - 31061992
Alignment:
| Q |
1 |
tgaggaggagcagagagcaatgactcatcaatagcatcactaagatactcctaattttgattacctgcctcaccttgtggagctacctcaataaaattat |
100 |
Q |
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| T |
31061585 |
tgaggagaatcagagagcaatgattcatcaatagcatcactaagatactcctaattttgattacatgcctcaccttgtggagctacctcaataaaattat |
31061684 |
T |
|
| Q |
101 |
taaatcaagcaaagtggatatatatgcataattgtcttctttgcttgattgaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31061685 |
taaatcaagcaaagtggatatatatgcataattgtcttctttgcttgattgaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatc |
31061784 |
T |
|
| Q |
201 |
attctgttccaaatagttacaaaatatcatcaatgtcatttgcatcagtcaaagcaacgatagtgttaattagtatatcacatgtattatagttgagctt |
300 |
Q |
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| T |
31061785 |
attctgttccaaatagttagaaaatatcatcaatgtcatttgcattagtcaaagcaacgatagtgttaattagtatatcacatgtattatagttgagctt |
31061884 |
T |
|
| Q |
301 |
gtagaattaaatctagtaccaaaggacgctttgcacttgtgtactagccgagggagaaacagaaggaagaggcgtgtataccataactcttgttcacaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31061885 |
gtagaattaaatctagtaccaaaggacgctttgcacttgtgtactagccgagggagaaacagaaggaagaggcgtgtataccataactcttgttcacaag |
31061984 |
T |
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| Q |
401 |
tcccacat |
408 |
Q |
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|||||||| |
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| T |
31061985 |
tcccacat |
31061992 |
T |
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