View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4005_high_2 (Length: 737)
Name: NF4005_high_2
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 237 - 530
Target Start/End: Complemental strand, 47127516 - 47127200
Alignment:
| Q |
237 |
ttgcatgcatgtacctgcttaaaaattacatcttgagcctcctcctggctcaattctggaagtaaaaaattactttcgagtgagtgagt----tataaca |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47127516 |
ttgcatgcatgtacctgcttaaaaattacatcttgagcctcctcctggctcaattctggaagtaaaaaattactttcgagtgagtgagtgagttataaca |
47127417 |
T |
|
| Q |
333 |
cgtcagaatcattgtcttata------------------cacataagtttaaacataaataaagtcaaaaacataatacta---gacaatattacgactn |
411 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47127416 |
cgtcagaatcattgtcttatttaatgctactttagatcccacataagtttaaacatgaataaagtcaaaaacataatactactagacaatattacgactc |
47127317 |
T |
|
| Q |
412 |
nnnnnnaacattgtacttatacactttaccacatgatgataattgaaaatgtaaacggtaacatggaaaacttacgaaatgcatcacattgcccttcaac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47127316 |
cccc--aacattgtacttatacactttaccacatgatgataattgaaaatgtaaacggtaacatggaaaacttacgaaacgcatcacattgcccttcaac |
47127219 |
T |
|
| Q |
512 |
cggaagcttcaagtcatct |
530 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47127218 |
cggaagcttcaagtcatct |
47127200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 576 - 727
Target Start/End: Complemental strand, 47127150 - 47126999
Alignment:
| Q |
576 |
gcaacttactaagtatcaattttaaaaatatgtacatacatttgtaaatatatatgagatgagaattacattggaaaatataaaattaacacatgtatat |
675 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47127150 |
gcaactcactaagtatcaattttaaaaatatgtacatacatgtgtaaatatatatgagatgagaattacattggaaaatataaaattaacacatgtatat |
47127051 |
T |
|
| Q |
676 |
tatagaactttgcacctgaaaacccagcttttaataaatttggtcgcctatg |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47127050 |
tatagaactttgcacctgaaaacccagcttttaataaatttggtcgcctatg |
47126999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 47127714 - 47127531
Alignment:
| Q |
18 |
ctttttgctcttctccatatataagtaagccatgcctatacaaacatgatggatggatggataagaaagaacgaaccagtcgataatcaaatgtaattta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
47127714 |
ctttttgctcttctccatatataagtaagccatgcctatacaaacatgatggatggat--------aagaaagaaccagtcgataatcaaatgtaattta |
47127623 |
T |
|
| Q |
118 |
atttgaaattagaaatg----gtagcttacttaagtgacatattcatttttatatttttaagagatatagtaagtataaaagtagaacgtga |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
47127622 |
atttgaaattagaaatgcatggtagcttacttaagtgacatattcatttttatatttgtaagatatatagtaaggataaaagtataacgtga |
47127531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University