View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_23 (Length: 360)
Name: NF4005_high_23
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 53452004 - 53451670
Alignment:
| Q |
1 |
tcttatattgcatgattttaactttgaattgacacgtgtttcacatttttt-agttgatgactgttttatgtgatcttgaaggttgtgtgttattggctt |
99 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53452004 |
tcttaaattgcatgattttaactttaaattgacacgtgtttcacatttttttagtttatgactgttttatgtgattttgaaggttgtgtgttattggctt |
53451905 |
T |
|
| Q |
100 |
ggctccttcacacattgcttttaaggatgaagatggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaag |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53451904 |
ggctccttcacacattgcttttaaggatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaag |
53451805 |
T |
|
| Q |
200 |
cggaagaaggtacactgcagcttttctttatttatgagtttatgactcacaatatctttctttataatcagctgattaacatttgtgtaatttgttgtgt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53451804 |
cggaagaaggtacactgcagcttttctttatttatgagtttatgactcacaatatctttctttataatcagcttattaacatttgtgtaatttgttgtgt |
53451705 |
T |
|
| Q |
300 |
ttcaaaaatttgtgttctaaaatggctttttccgt |
334 |
Q |
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| T |
53451704 |
ttcaaaaatttgtgttctaaaatggctttttccgt |
53451670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 31053831 - 31054128
Alignment:
| Q |
1 |
tcttatattgcatgattttaactttgaattgacacgtgtttcacattttttagttgatgactgttttatgtgatcttgaaggttgtgtgttattggcttg |
100 |
Q |
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| T |
31053831 |
tcttaaattgcatgattttaacttcaaattgatatgtgtttcacattttt-agtttattactgttttttgtgatctttaaggttgtctgttattggcttg |
31053929 |
T |
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| Q |
101 |
gctccttcacacattgcttttaaggatgaagatggaatcacatccgtagatttcaatgttggaaagtctgatcgaaccgctgtcaaggtctctggaaagc |
200 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
31053930 |
gctccttcacacattgcttttaatgatgaaggtggaatcacatccgtagatttcaatgttggaaagtctgatcaaaccgctgtgaaggtctctgaaaagc |
31054029 |
T |
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| Q |
201 |
ggaagaaggtacactgcagcttttctttatttatgagtttatgactcacaatatc--tttctttataatcagctgattaacatttgtgtaatttgttgt |
297 |
Q |
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|||| |||||||||| || ||| || |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||| |
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| T |
31054030 |
ggaaaaaggtacactacaacttgtccttatttataagtttatgactcacaatatctttttctttataatctgctgattaacatttgagtgctttgttgt |
31054128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 31054136 - 31054177
Alignment:
| Q |
291 |
ttgttgtgtttcaaaa-atttgtgttctaaaatggctttttc |
331 |
Q |
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| T |
31054136 |
ttgttgtgtttcaaaacatttgtgttctgaaatggctttttc |
31054177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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