View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_25 (Length: 349)
Name: NF4005_high_25
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 1184837 - 1185006
Alignment:
| Q |
7 |
acaacaacaatgtttatcactgcttgctccttctccttctcaacaccatatttcgagtaatagccatataacaccatctgaattattcccaatatgaacc |
106 |
Q |
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| T |
1184837 |
acaacaacaatgtttatcactgcttgctccttctccttctcaacactatatttcgagtaatagccatataacaccatctgaattattcccaatatgaacc |
1184936 |
T |
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| Q |
107 |
caactacatttgggagctgccnnnnnnnngtgttaattaataattagtatacaactatacatagctgatg |
176 |
Q |
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| T |
1184937 |
caactacatttgggagctgccaaaaaaaagtgttaattaataattagtatacaactatacatagctgatg |
1185006 |
T |
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Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 1185071 - 1185164
Alignment:
| Q |
246 |
atatcccttttaacaaaaccgtatagaaaccatactacggcacttaatgtaagaaaaagtgacaaattgaagggcataaattccacaccctttg |
339 |
Q |
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| T |
1185071 |
atatcccttttaacaaaaccgtatagaaaccatactacggcacttaatgtaagaaaaagtgacaaattgaagggcataaattctacactctttg |
1185164 |
T |
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