View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4005_high_29 (Length: 333)

Name: NF4005_high_29
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4005_high_29
NF4005_high_29
[»] chr5 (4 HSPs)
chr5 (19-323)||(656602-656906)
chr5 (216-275)||(12842972-12843031)
chr5 (221-275)||(37022666-37022720)
chr5 (224-275)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (129-211)||(3896085-3896167)
chr4 (129-209)||(3144996-3145076)
chr4 (221-275)||(14027054-14027108)
chr4 (221-275)||(6746689-6746743)
chr4 (221-268)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (220-275)||(29526-29581)
scaffold0015 (221-275)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (220-275)||(86508-86563)
chr8 (220-275)||(91825-91880)
chr8 (220-275)||(19802979-19803034)
chr8 (221-275)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (220-275)||(11716628-11716683)
chr7 (221-275)||(13167037-13167091)
chr7 (222-275)||(11711383-11711436)
chr7 (220-275)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (220-275)||(16777801-16777856)
chr6 (220-275)||(32703873-32703928)
chr6 (221-275)||(16772466-16772520)
chr6 (221-275)||(32708250-32708304)
chr6 (221-273)||(26243701-26243753)
[»] chr3 (11 HSPs)
chr3 (220-275)||(4100097-4100152)
chr3 (220-275)||(5383349-5383404)
chr3 (220-275)||(6806583-6806638)
chr3 (221-275)||(5378014-5378068)
chr3 (221-275)||(13719155-13719209)
chr3 (220-275)||(13723051-13723106)
chr3 (220-275)||(4099737-4099792)
chr3 (284-323)||(5378234-5378273)
chr3 (221-275)||(2185446-2185500)
chr3 (223-272)||(23619432-23619481)
chr3 (284-323)||(5383570-5383609)
[»] chr1 (15 HSPs)
chr1 (220-275)||(2797004-2797059)
chr1 (220-275)||(14471543-14471598)
chr1 (220-275)||(14476906-14476961)
chr1 (220-275)||(23200390-23200445)
chr1 (221-275)||(2790575-2790629)
chr1 (221-275)||(23202759-23202813)
chr1 (221-275)||(39170182-39170236)
chr1 (224-275)||(42375365-42375416)
chr1 (220-275)||(21010395-21010450)
chr1 (284-323)||(14471763-14471802)
chr1 (284-323)||(14477126-14477165)
chr1 (284-323)||(39169978-39170017)
chr1 (221-274)||(394763-394816)
chr1 (223-274)||(14632655-14632706)
chr1 (221-256)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (221-275)||(20925392-20925446)
chr2 (132-206)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 656602 - 656906
Alignment:
Q  19 atggagtgtgtgaaagaaaatccatgaatgcaataattgaactcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656602 atggagtgtgtgaaagaaaatccatgaatgcaataattgaactcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcat 656701  T
Q  119 tgattgcaaagtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacac 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656702 tgattgcaaagtattaccagggttctgttggatggagatccacagaatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacac 656801  T
Q  219 catggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaagnnnnnnnncaatgaggtaagggatgatgtaagtgaccttgagc 318  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  656802 catggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaagttttttttcaatgaggtaagggatgatgtaagtgaccttgagc 656901  T
Q  319 ctatg 323  Q
    |||||    
T  656902 ctatg 656906  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 12843031 - 12842972
Alignment:
Q  216 caccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12843031 caccttggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 12842972  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 37022666 - 37022720
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37022666 tggctaagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 37022720  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 24092098 - 24092149
Alignment:
Q  224 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24092098 ctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 24092149  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 3896167 - 3896085
Alignment:
Q  129 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattaca 211  Q
    ||||||||| |||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  3896167 gtattaccatggttctgttggatgtagatccacagactttactctttctgatctttgcgcaagctttcgctgatcaaattaca 3896085  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 3144996 - 3145076
Alignment:
Q  129 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaatta 209  Q
    ||||||||| |||||| ||||||| ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||    
T  3144996 gtattaccatggttctgttggatgtagatccacagacttcactctttctgatctttgcgcaagctttcgctgatcaaatta 3145076  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 14027108 - 14027054
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14027108 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14027054  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 6746689 - 6746743
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6746689 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaacgcaag 6746743  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 8724822 - 8724775
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaa 268  Q
    ||||||| || |||||||||||| |||| |||||||||||||||||||    
T  8724822 tggctcaaaagccaagagagaatccactatctaactctcaaatgagaa 8724775  T

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Target: scaffold0015 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 29526 - 29581
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29526 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 29581  T

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Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 24211 - 24265
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24211 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 24265  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 86563 - 86508
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  86563 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 86508  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 91880 - 91825
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  91880 atggctcataaaccaagagagaatccactctctaactctcaaatgagaaactcaag 91825  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 19803034 - 19802979
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19803034 atggctcagaaaccaagagagaatccactctctaactctcaaattagaaactcaag 19802979  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 29010782 - 29010836
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  29010782 tggctcagaaatcaagagagaatccactctctaactctcaaatgagaaactcaag 29010836  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 11716683 - 11716628
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11716683 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11716628  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 13167091 - 13167037
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13167091 tggctcagaaatcaagagagaattcactctctaactctcaaatgagaaactcaag 13167037  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 11711436 - 11711383
Alignment:
Q  222 ggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11711436 ggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11711383  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 13160636 - 13160581
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  13160636 atggctcagaaacgaagagagaatccactctctaactctcatatgagaaactcaag 13160581  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 16777801 - 16777856
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16777801 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 16777856  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 32703928 - 32703873
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703928 atggctcagaaaccaagagagaatccactctataactctcaaatgagaaactcaag 32703873  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 16772466 - 16772520
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16772466 tggctcagaaaccaatagagaatccactctctaactctcaaatgagaaactcaag 16772520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 32708304 - 32708250
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32708304 tggctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 32708250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 26243753 - 26243701
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactca 273  Q
    |||||||||||| ||||||||  ||| | ||||||||| ||||||||||||||    
T  26243753 tggctcagaaactaagagagacctcattttctaactcttaaatgagaaactca 26243701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 4100152 - 4100097
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4100152 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 4100097  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 5383349 - 5383404
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5383349 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5383404  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 6806583 - 6806638
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6806583 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 6806638  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 5378014 - 5378068
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5378014 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5378068  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 13719155 - 13719209
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13719155 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 13719209  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 13723051 - 13723106
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13723051 atggctcagaaaccaagagagaatccactctctaactatcaaatgagaaactcaag 13723106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 4099737 - 4099792
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  4099737 atggctcataaaccaagagagaatccactctctaactctcaaaagagaaactcaag 4099792  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 5378234 - 5378273
Alignment:
Q  284 caatgaggtaagggatgatgtaagtgaccttgagcctatg 323  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5378234 caatgaggtaagggatgatgtaagtgaccttgagcctatg 5378273  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 2185500 - 2185446
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  2185500 tggctcagaaatcaagagagaatccattctctaactttcaaatgagaaactcaag 2185446  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 23619481 - 23619432
Alignment:
Q  223 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactc 272  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  23619481 gctcagaaaccaagagagaatccactctattactctcaaatgagaaactc 23619432  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 5383570 - 5383609
Alignment:
Q  284 caatgaggtaagggatgatgtaagtgaccttgagcctatg 323  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  5383570 caatgaggtaagggatgatgtaagtgaccttgagcttatg 5383609  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 2797004 - 2797059
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2797004 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2797059  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 14471543 - 14471598
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14471543 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14471598  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 14476906 - 14476961
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14476906 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14476961  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 23200445 - 23200390
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23200445 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23200390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 2790575 - 2790629
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2790575 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2790629  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 23202813 - 23202759
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23202813 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23202759  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 39170236 - 39170182
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39170236 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 39170182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 42375416 - 42375365
Alignment:
Q  224 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42375416 ctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 42375365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 21010395 - 21010450
Alignment:
Q  220 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  21010395 atggctcagaaaccaagagagtatccactctctaactctgaaatgagaaactcaag 21010450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 14471763 - 14471802
Alignment:
Q  284 caatgaggtaagggatgatgtaagtgaccttgagcctatg 323  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14471763 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14471802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 14477126 - 14477165
Alignment:
Q  284 caatgaggtaagggatgatgtaagtgaccttgagcctatg 323  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14477126 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14477165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 39170017 - 39169978
Alignment:
Q  284 caatgaggtaagggatgatgtaagtgaccttgagcctatg 323  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39170017 caatgaggtaagggatgatgtaagtgaccttgagcctatg 39169978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 394763 - 394816
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 274  Q
    ||||||||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  394763 tggctcagaaatcaagagagaattcactctgtaattttcaaatgagaaactcaa 394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 14632655 - 14632706
Alignment:
Q  223 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 274  Q
    ||||| |||| |||||||||| |||||| ||||| |||||||||||||||||    
T  14632655 gctcataaacgaagagagaatccactctttaactttcaaatgagaaactcaa 14632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 42377430 - 42377395
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaact 256  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42377430 tggctcagaaaccaagagagaatccactctctaact 42377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 20925392 - 20925446
Alignment:
Q  221 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 275  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20925392 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 20925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 44046490 - 44046416
Alignment:
Q  132 ttaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaa 206  Q
    |||||| |||||  ||||||| ||||||||| | || |||||||||||||| || |||||||| |||||||||||    
T  44046490 ttaccatggttcagttggatgtagatccacacatttcactctttctgatctctgcgcaagcttacgctgatcaaa 44046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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