View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4005_high_35 (Length: 313)

Name: NF4005_high_35
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4005_high_35
NF4005_high_35
[»] chr2 (5 HSPs)
chr2 (38-174)||(28634240-28634376)
chr2 (39-174)||(41363474-41363609)
chr2 (43-174)||(44679390-44679521)
chr2 (39-168)||(11925256-11925385)
chr2 (47-119)||(7885410-7885482)
[»] chr4 (11 HSPs)
chr4 (37-174)||(55584606-55584743)
chr4 (39-174)||(53437444-53437579)
chr4 (39-174)||(53438877-53439012)
chr4 (44-174)||(46670803-46670933)
chr4 (39-174)||(16420666-16420800)
chr4 (38-168)||(9341538-9341668)
chr4 (39-168)||(9352640-9352769)
chr4 (38-168)||(6673066-6673196)
chr4 (44-167)||(42515084-42515199)
chr4 (60-163)||(987915-988020)
chr4 (176-213)||(55585393-55585430)
[»] chr7 (9 HSPs)
chr7 (39-174)||(9953568-9953703)
chr7 (39-174)||(23410104-23410240)
chr7 (39-162)||(25138090-25138213)
chr7 (39-168)||(30759064-30759193)
chr7 (39-174)||(23688245-23688380)
chr7 (39-168)||(7747905-7748034)
chr7 (47-162)||(42779220-42779333)
chr7 (74-163)||(28753830-28753921)
chr7 (46-82)||(45280145-45280181)
[»] scaffold0049 (2 HSPs)
scaffold0049 (173-302)||(38948-39077)
scaffold0049 (39-168)||(38164-38293)
[»] chr6 (10 HSPs)
chr6 (39-174)||(2867949-2868084)
chr6 (39-174)||(2880408-2880543)
chr6 (39-174)||(35024158-35024293)
chr6 (39-168)||(33354476-33354605)
chr6 (55-164)||(31472676-31472787)
chr6 (48-164)||(31499238-31499356)
chr6 (116-168)||(28872158-28872210)
chr6 (39-125)||(20026617-20026702)
chr6 (35-164)||(31513749-31513880)
chr6 (48-164)||(31493852-31493970)
[»] chr5 (2 HSPs)
chr5 (39-174)||(41586380-41586515)
chr5 (84-167)||(32484162-32484245)
[»] chr3 (7 HSPs)
chr3 (39-179)||(11773143-11773283)
chr3 (39-168)||(12678425-12678554)
chr3 (39-168)||(21222075-21222204)
chr3 (39-162)||(36530208-36530330)
chr3 (39-162)||(27088211-27088334)
chr3 (39-162)||(36533651-36533773)
chr3 (84-120)||(560196-560232)
[»] scaffold0434 (2 HSPs)
scaffold0434 (39-174)||(11591-11726)
scaffold0434 (202-287)||(10812-10898)
[»] scaffold0144 (1 HSPs)
scaffold0144 (39-174)||(39682-39817)
[»] scaffold0210 (1 HSPs)
scaffold0210 (37-168)||(22873-23004)
[»] scaffold0007 (2 HSPs)
scaffold0007 (39-174)||(276071-276202)
scaffold0007 (202-302)||(275278-275379)
[»] chr8 (11 HSPs)
chr8 (39-168)||(10333333-10333462)
chr8 (38-168)||(9330771-9330901)
chr8 (45-167)||(40455355-40455477)
chr8 (41-161)||(14647317-14647436)
chr8 (63-164)||(12104078-12104179)
chr8 (47-163)||(14663960-14664076)
chr8 (46-169)||(14641699-14641821)
chr8 (105-164)||(26180003-26180062)
chr8 (39-112)||(10236511-10236584)
chr8 (1-34)||(5568039-5568072)
chr8 (81-122)||(12071137-12071177)
[»] chr1 (3 HSPs)
chr1 (39-168)||(36216191-36216320)
chr1 (39-135)||(35765125-35765221)
chr1 (39-89)||(30440854-30440904)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 28634376 - 28634240
Alignment:
Q  38 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28634376 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatattgtcgaata 28634277  T
Q  138 atatttataacttaattgaacaaaaaggtactgaatt 174  Q
    |||||||||||||||||||||||||||||||||||||    
T  28634276 atatttataacttaattgaacaaaaaggtactgaatt 28634240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 41363609 - 41363474
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  41363609 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaatat 41363510  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||| ||||||||||||||| ||||    
T  41363509 tatttataacttaatcgaacaaaaaggtacttaatt 41363474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 44679390 - 44679521
Alignment:
Q  43 agcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44679390 agcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatagtatt 44679489  T
Q  143 tataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||||||||| || |||||||    
T  44679490 tataacttaattgaacaaaaatgtgctgaatt 44679521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 11925256 - 11925385
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11925256 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 11925355  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  11925356 tacttgttacttaattgaacaaaaaggtac 11925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 7885410 - 7885482
Alignment:
Q  47 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatc 119  Q
    ||||| ||||||||||   |||||| |||||||||||||||||||||||||  |||||| |||||| ||||||    
T  7885410 atttttgcaagtgtacatgatcgtgtaagtagtaaaattaaaacggtaagattgagtgttgaactcaaggatc 7885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 55584606 - 55584743
Alignment:
Q  37 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55584606 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaacgagtgtcgaactcgaggatcgcgttatactgtcgaat 55584705  T
Q  137 aatatttataacttaattgaacaaaaaggtactgaatt 174  Q
    | ||||||||||||||||||||||||||||||||||||    
T  55584706 agtatttataacttaattgaacaaaaaggtactgaatt 55584743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 53437579 - 53437444
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53437579 tgatagcgattttcgcaagtgtacaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatag 53437480  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  53437479 tatttataacttaattgaacaaaaaggtactgaatt 53437444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 53439012 - 53438877
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53439012 tgatagcgattttcgcaagtgtacaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatag 53438913  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  53438912 tatttataacttaattgaacaaaaaggtactgaatt 53438877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 46670803 - 46670933
Alignment:
Q  44 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||    
T  46670803 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtattaaactcgaggatcgcgttatactgtcgaataatattt 46670902  T
Q  144 ataacttaattgaacaaaaaggtactgaatt 174  Q
    |||||||||||||||||||||||||||||||    
T  46670903 ataacttaattgaacaaaaaggtactgaatt 46670933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 16420800 - 16420666
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16420800 tgatagcgattttcgcaagtgtacaaaatcgttcaagtagtaaatttaaa-cggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 16420702  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||| | ||||||||||||||||||||||||||||    
T  16420701 tatttgtgacttaattgaacaaaaaggtactgaatt 16420666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 9341538 - 9341668
Alignment:
Q  38 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 137  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  9341538 atgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaa 9341637  T
Q  138 atatttataacttaattgaacaaaaaggtac 168  Q
    ||| || | ||||||||||||||||||||||    
T  9341638 atacttgttacttaattgaacaaaaaggtac 9341668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 9352640 - 9352769
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  9352640 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaaa 9352739  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  9352740 tacttgttacttaattgaacaaaaaggtac 9352769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 6673066 - 6673196
Alignment:
Q  38 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 137  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||     
T  6673066 atgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaattttaaacgttaagaccgagtgtcgaactcaagaatcgcgttatactgtcgaatg 6673165  T
Q  138 atatttataacttaattgaacaaaaaggtac 168  Q
    ||| || | ||||||||||||||||||||||    
T  6673166 atacttgttacttaattgaacaaaaaggtac 6673196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 42515084 - 42515199
Alignment:
Q  44 gcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt 143  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||        |||||||||    
T  42515084 gcgattttcgcaagtgtatgaaatcgtgcaagtagtaaaattaaaacggtaagactgagtctcgaactcgaagatctcgttat--------ataatattt 42515175  T
Q  144 ataacttaattgaacaaaaaggta 167  Q
     | |||||||||||||||||||||    
T  42515176 gtgacttaattgaacaaaaaggta 42515199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 988020 - 987915
Alignment:
Q  60 tacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattt--ataacttaattgaa 157  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||| ||||||||| |||||  |||| |||||||||    
T  988020 tacgaaatcgtataagtagtaaaattaaaacggtaagatcgaatgtcgaactcgagaatcacgttatattgtcgaatattatttacataatttaattgaa 987921  T
Q  158 caaaaa 163  Q
    ||||||    
T  987920 caaaaa 987915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 55585393 - 55585430
Alignment:
Q  176 gttctcctctcgttttccaaccctcgtattcttctttt 213  Q
    |||||||||||| |||||||||||||||||||||||||    
T  55585393 gttctcctctcggtttccaaccctcgtattcttctttt 55585430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 9953568 - 9953703
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9953568 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaatga 9953667  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9953668 tatttataacttaattgaacaaaaaggtactcaatt 9953703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 23410240 - 23410104
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaa-tcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 137  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23410240 tgatagcgattttcacaagtgtacgaaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 23410141  T
Q  138 atatttataacttaattgaacaaaaaggtactgaatt 174  Q
     |||||||||||||||||||||||||||| |||||||    
T  23410140 gtatttataacttaattgaacaaaaaggtcctgaatt 23410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 25138213 - 25138090
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25138213 tgatagcgattttcgtaagtgtacgaaatcgtgtaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaataa 25138114  T
Q  139 tatttataacttaattgaacaaaa 162  Q
    ||||||||||||||||||||||||    
T  25138113 tatttataacttaattgaacaaaa 25138090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 30759193 - 30759064
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30759193 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 30759094  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  30759093 tacttgttacttaattgaacaaaaaggtac 30759064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 23688245 - 23688380
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||||||||||    
T  23688245 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcaaactcaagaatcgtgttatactgtcgaataa 23688344  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    || ||   ||||||||||||||||||||||||||||    
T  23688345 tacttgctacttaattgaacaaaaaggtactgaatt 23688380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 7748034 - 7747905
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||| ||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  7748034 tgataacgattttcgcaagttaacgaaattgtgcaagtagtaaaattaaatcggtaagaccgagtgtcgaactcgaagatcgtgttatactgtcgaataa 7747935  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || |  | |||||| |||||||||||||||    
T  7747934 tactcgttacttaagtgaacaaaaaggtac 7747905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 42779220 - 42779333
Alignment:
Q  47 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttata 146  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||| | |||||| |||||  |||||||    
T  42779220 attttcgcaagtgtacgaaatcgtgcaagtagtaa--ttaaaacggtaagaccgagtatcgaactcgaggattgcggtttactgttgaataggatttata 42779317  T
Q  147 acttaattgaacaaaa 162  Q
    ||||||||||||||||    
T  42779318 acttaattgaacaaaa 42779333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 28753830 - 28753921
Alignment:
Q  74 agtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat--aatatttataacttaattgaacaaaaa 163  Q
    |||| |||||||||||||||||||   |||||| |||||||||| | | ||||||| || |||   |||||||||| ||||| |||||||||    
T  28753830 agtaataaaattaaaacggtaagattaagtgtcaaactcgaggaccacattatactatcaaattatatatttataatttaatagaacaaaaa 28753921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 45280145 - 45280181
Alignment:
Q  46 gattttcgcaagtgtacgaaatcgtgcaagtagtaaa 82  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  45280145 gattttcacaagtgtacgaaatcgttcaagtagtaaa 45280181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 173 - 302
Target Start/End: Original strand, 38948 - 39077
Alignment:
Q  173 ttcgttctcctctcgttttccaaccctcgtattcttcttttcttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 272  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38948 ttcgttctcctctcgttttccaaccctcgtattcttctttttttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttag 39047  T
Q  273 gctttctttactctcattcgctggaccttt 302  Q
    ||||||||||||||||||||||||||||||    
T  39048 gctttctttactctcattcgctggaccttt 39077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 38164 - 38293
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38164 tgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 38263  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  38264 tacttgttacttaattgaacaaaaaggtac 38293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 2868084 - 2867949
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2868084 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccaagtgtcgaactcgaggatcgcgttatactgtcgaataa 2867985  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||| | ||||||||||||||||||||||||||||    
T  2867984 tatttgtgacttaattgaacaaaaaggtactgaatt 2867949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 2880543 - 2880408
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2880543 tgatagcgattttcgccagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 2880444  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||| | ||||||||||||||||||||||||||||    
T  2880443 tatttgtgacttaattgaacaaaaaggtactgaatt 2880408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 35024293 - 35024158
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35024293 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 35024194  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||| | | |||||||||||||||| |||||||||    
T  35024193 tatttgtgatttaattgaacaaaaagttactgaatt 35024158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 33354605 - 33354476
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33354605 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtaataaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcaaataa 33354506  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    ||||| | ||||||||||||||||||||||    
T  33354505 tatttgttacttaattgaacaaaaaggtac 33354476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 31472676 - 31472787
Alignment:
Q  55 aagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---tttataactta 151  Q
    |||||||||||||||||||| ||||||| ||||||||| || | | ||||| |||||||||||  |||| ||| ||||||||  ||   |||| ||||||    
T  31472676 aagtgtacgaaatcgtgcaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggactgcgtcatattgtcgaattgtatattttaaaactta 31472774  T
Q  152 attgaacaaaaag 164  Q
    |||||||||||||    
T  31472775 attgaacaaaaag 31472787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 31499238 - 31499356
Alignment:
Q  48 ttttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---ttta 144  Q
    |||| |||||||||||||||| || || ||||||| ||||||||| || | | ||||| ||||||||||| ||||| ||| ||||||||  ||   ||||    
T  31499238 tttttgcaagtgtacgaaatcatgtaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggaccgcgtcatattgtcgaattgtatatttta 31499336  T
Q  145 taacttaattgaacaaaaag 164  Q
     |||||||||||||||||||    
T  31499337 aaacttaattgaacaaaaag 31499356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 28872210 - 28872158
Alignment:
Q  116 gatcgcgttatactgtcgaataatatttataacttaattgaacaaaaaggtac 168  Q
    ||||||||||||||||||||| ||| || | ||||||||||||||||||||||    
T  28872210 gatcgcgttatactgtcgaatgatacttgttacttaattgaacaaaaaggtac 28872158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 20026702 - 20026617
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgtta 125  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||| |||||||||    ||||||| |||| |||| ||||||||    
T  20026702 tgatagcgatttttacaagtgtacgaaatcgtacaagtagt-aaatttaaacggtaactttgagtgtcaaacttgagggtcgcgtta 20026617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 31513749 - 31513880
Alignment:
Q  35 aagatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcga 134  Q
    ||||||||| ||||||| |||||||||| |||||||  || ||||||| ||||||||| || ||  ||||| |||||||||||  |||| ||| ||||||    
T  31513749 aagatgataccgatttttgcaagtgtacaaaatcgtataattagtaaagttaaaacggaaaaaca-agtgttgaactcgaggactgcgtcatattgtcga 31513847  T
Q  135 ataata---tttataacttaattgaacaaaaag 164  Q
    ||  ||   |||| ||||| |||||||||||||    
T  31513848 attgtatattttaaaactttattgaacaaaaag 31513880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 31493852 - 31493970
Alignment:
Q  48 ttttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata---ttta 144  Q
    |||| |||||||||||||||| || || ||||||| ||||||||| || | | ||||| |||||||||||  |||| ||| ||||||||  ||   ||||    
T  31493852 tttttgcaagtgtacgaaatcatgtaattagtaaagttaaaacgg-aaaaacaagtgttgaactcgaggactgcgtcatattgtcgaattgtatatttta 31493950  T
Q  145 taacttaattgaacaaaaag 164  Q
     |||||||||||||||||||    
T  31493951 aaacttaattgaacaaaaag 31493970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 41586515 - 41586380
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41586515 tgatagcgattttcgcaagtgtaagaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 41586416  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||| | ||||||||||||||||||||||||||||    
T  41586415 tatttttgacttaattgaacaaaaaggtactgaatt 41586380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 32484245 - 32484162
Alignment:
Q  84 ttaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaaaggta 167  Q
    |||||| ||||||||||||||||||| | |||| |||||||||| ||||||||| |||||||||||||| | ||||||||||||    
T  32484245 ttaaaatggtaagaccgagtgtcgaatttgaggttcgcgttataatgtcgaatactatttataacttaactaaacaaaaaggta 32484162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 11773143 - 11773283
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||     
T  11773143 tgatagcgattttcgcaagtgtacgaaatcatgcaagtagtaaaattaaaacggtaagaccgagtgtggaactcgaggatcgtgttatactgtcgaatag 11773242  T
Q  139 tatttataacttaattgaacaaaaaggtactgaattcgttc 179  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11773243 tatttataacttaattgaacaaaaaggtactgaatttgttc 11773283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 12678425 - 12678554
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12678425 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaataa 12678524  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  12678525 tacttgttacttaattgaacaaaaaggtac 12678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 21222204 - 21222075
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21222204 tgataacgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagatcgagtgtcgaactcaaggatcgcgttatactgtcgaataa 21222105  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  21222104 tacttgttacttaattgaacaaaaaggtac 21222075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 36530330 - 36530208
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||| |||||     
T  36530330 tgatggcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaat-aaaacggtaagaccgagtgtcgaactcgaggattgcggtttaatgttgaatag 36530232  T
Q  139 tatttataacttaattgaacaaaa 162  Q
     |||||| ||||||||||||||||    
T  36530231 aatttatgacttaattgaacaaaa 36530208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 27088211 - 27088334
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||  |||||||| | |||||     
T  27088211 tgatagcgattttcgctactgtacgaaatcgtgcaagtagtaaaattaaaacggtaagacacagtgtcaaactcgaagatcatgttatactattgaatag 27088310  T
Q  139 tatttataacttaattgaacaaaa 162  Q
    | ||||||||||||||||||||||    
T  27088311 tgtttataacttaattgaacaaaa 27088334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 36533773 - 36533651
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||  |||||     
T  36533773 tgatggcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaat-aaaacggtaagaccgagtgtcgaactcgaggattgcggtttaatgatgaatag 36533675  T
Q  139 tatttataacttaattgaacaaaa 162  Q
     |||||| ||||||||||||||||    
T  36533674 aatttatgacttaattgaacaaaa 36533651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 560232 - 560196
Alignment:
Q  84 ttaaaacggtaagaccgagtgtcgaactcgaggatcg 120  Q
    ||||||||||||||||||||||||||||| |||||||    
T  560232 ttaaaacggtaagaccgagtgtcgaactcaaggatcg 560196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 11726 - 11591
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||     
T  11726 tgatagcgattttcgtaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagatcgagtgtcgaactcgaggatcgcgttataccgtcgaatag 11627  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  11626 tatttataacttaattgaacaaaaaggtactgaatt 11591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 10898 - 10812
Alignment:
Q  202 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctc 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10898 tattcttcttttacttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctc 10812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 39682 - 39817
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||     
T  39682 tgatagcgattttcgcaaatgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggattgcgttatactctcgaatag 39781  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  39782 tatttataacttaattgaacaaaaaggtactgaatt 39817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 22873 - 23004
Alignment:
Q  37 gatgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaat 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  22873 gatgctagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacagtaagatcgagtgtcgaactcgaggatcgcgttatactgtcgaat 22972  T
Q  137 aatatttataacttaattgaacaaaaaggtac 168  Q
    |||| || | ||||||||||||||||||||||    
T  22973 aatacttgttacttaattgaacaaaaaggtac 23004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 276202 - 276071
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    |    
T  276202 tgatagtgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtttcgaactcgaggatcgcgttatattgtcg----a 276107  T
Q  139 tatttataacttaattgaacaaaaaggtactgaatt 174  Q
    |||||||||||||||||||||||||||||| |||||    
T  276106 tatttataacttaattgaacaaaaaggtaccgaatt 276071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 275379 - 275278
Alignment:
Q  202 tattcttctttt-cttggcttttatacacgccctctatgatataagctcctccacgtgtgccaaatttttaggctttctttactctcattcgctggacct 300  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  275379 tattcttcttttacttagcttttatacacgccctctatgatataagctcctccacgtcttccaaatttttaggctttctttactctcattcactggacct 275280  T
Q  301 tt 302  Q
    ||    
T  275279 tt 275278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 10333462 - 10333333
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10333462 tgatagcggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagaccgagtgtcgaactcaaggatcgcgttatactgtcgaaaaa 10333363  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  10333362 tacttgttacttaattgaacaaaaaggtac 10333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 9330901 - 9330771
Alignment:
Q  38 atgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaata 137  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||     
T  9330901 atgatagcgattttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaagagcgagtgtcgaactcaaggatcgcgttatactgttgaatg 9330802  T
Q  138 atatttataacttaattgaacaaaaaggtac 168  Q
    ||| ||   ||||||||||||||||||||||    
T  9330801 atacttgagacttaattgaacaaaaaggtac 9330771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 40455477 - 40455355
Alignment:
Q  45 cgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatattta 144  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||||||||| |||| |||||| || ||||||||||| |||||||| || |||||||||||    
T  40455477 cgatttttgcaagtgtatgaaatcatgcaagcagtaaaattaaaacggtgagactgagtgtagagctcgaggatcgtgttatactatcaaataatattta 40455378  T
Q  145 taacttaattgaacaaaaaggta 167  Q
    | |||||| | ||||||||||||    
T  40455377 tgacttaactaaacaaaaaggta 40455355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 14647317 - 14647436
Alignment:
Q  41 atagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataata 140  Q
    ||||| |||||||||||||| ||||||| || ||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||| ||||||||||    
T  14647317 atagcaattttcgcaagtgttcgaaatcatgaaagtagtaaaattaaaatggtaaaaccgagtgt-gaactcgaggattgcgttatactatcgaataata 14647415  T
Q  141 tttataacttaattgaacaaa 161  Q
     |||||  |||||||| ||||    
T  14647416 attatattttaattgatcaaa 14647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 12104179 - 12104078
Alignment:
Q  63 gaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaa 162  Q
    |||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||| |||||||| | ||||||||||| |||| ||| | |||||||    
T  12104179 gaaatcgtgcaattagtaaaattaaaatggtaagaccgagtatcaaactcgaggatcgtgttatactcttgaataatatttttaacataactaaacaaaa 12104080  T
Q  163 ag 164  Q
    ||    
T  12104079 ag 12104078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 14664076 - 14663960
Alignment:
Q  47 attttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttata 146  Q
    ||||||| |||||| |||||||||| || |||||||||||||| | |||||| ||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  14664076 attttcgtaagtgttcgaaatcgtgaaaatagtaaaattaaaatgataagactgagtgtc-aactcgaggaccgcgttatactcttgaataatatttata 14663978  T
Q  147 -acttaattgaacaaaaa 163  Q
     | ||||||||| |||||    
T  14663977 tatttaattgaagaaaaa 14663960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 14641699 - 14641821
Alignment:
Q  46 gattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataatatttat 145  Q
    |||||||| |||||| | |||| ||| || |||||||||||||| |||||||||||||||| |||||||| | || |||||||||  |||||||||||||    
T  14641699 gattttcgtaagtgttcaaaattgtgaaaatagtaaaattaaaatggtaagaccgagtgtc-aactcgagtaccgtgttatactgatgaataatatttat 14641797  T
Q  146 aacttaattgaacaaaaaggtact 169  Q
    |  |||| |||| |||||| ||||    
T  14641798 attttaaatgaagaaaaagttact 14641821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 26180003 - 26180062
Alignment:
Q  105 tcgaactcgaggatcgcgttatactgtcgaataatatttataacttaattgaacaaaaag 164  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||    
T  26180003 tcgaactcgaggatcatgttatactgtcgaataatacttataacttaactgaacaaaaag 26180062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 10236584 - 10236511
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactc 112  Q
    ||||| |||||||| |||||||||||||| || |||||  |||||||||||| |||||||| | |||| |||||    
T  10236584 tgataacgattttcacaagtgtacgaaattgtacaagttataaaattaaaacagtaagaccaaatgtcaaactc 10236511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5568072 - 5568039
Alignment:
Q  1 ttttattagaggaaagctagttttagagtattgt 34  Q
    |||||||||||||||||||||||||||| |||||    
T  5568072 ttttattagaggaaagctagttttagagcattgt 5568039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 12071137 - 12071177
Alignment:
Q  81 aaattaaaacggtaagaccgagtgtcgaactcgaggatcgcg 122  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  12071137 aaattaaaacggtaagaccgagtgtc-cactcgaggatcgcg 12071177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 36216320 - 36216191
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaataa 138  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  36216320 tgataacggttttcgcaagtgtacgaaatcgttcaagtagtaaatttaaaacggtaataccgagtgtcgaactcaaggatcgcgttatactgtcgaataa 36216221  T
Q  139 tatttataacttaattgaacaaaaaggtac 168  Q
    || || | ||||||||||||||||||||||    
T  36216220 tacttgttacttaattgaacaaaaaggtac 36216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 35765125 - 35765221
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaacggtaagaccgagtgtcgaactcgaggatcgcgttatactgtcgaa 135  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| || ||||| ||| | ||||||||||    
T  35765125 tgatagcgattttcgcaagtgtacgaaatcgggcaagtggtaaacttaaaacggtaagaccgagtgtcgaattcaaggattgcgatgtactgtcgaa 35765221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 30440854 - 30440904
Alignment:
Q  39 tgatagcgattttcgcaagtgtacgaaatcgtgcaagtagtaaaattaaaa 89  Q
    ||||| ||||||| |||| ||||| ||||||||||||||| ||||||||||    
T  30440854 tgataacgatttttgcaaatgtacaaaatcgtgcaagtagcaaaattaaaa 30440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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