View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_37 (Length: 303)
Name: NF4005_high_37
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 26886979 - 26887116
Alignment:
| Q |
1 |
taatagtaatggaagaaagtgagtaacttagaaaatgaatatgaagtagagaaggtggtagggatatgattttataggaaatagtattctttttatgatg |
100 |
Q |
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| T |
26886979 |
taataataatggaagaaagtgagtaacttagaaa-tgaatatgaagtagagaaggtggtggagatatgattttataggaaatagtattctttttatgatg |
26887077 |
T |
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| Q |
101 |
agttctagcacacacaaatcatgttttcttgtcacagaa |
139 |
Q |
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| T |
26887078 |
agttctagcgcacacaaatcatgttttcttgtcacagaa |
26887116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 26887175 - 26887257
Alignment:
| Q |
198 |
aatgatgacagtgtttcttatttattttttaacgcaggaatttgaatgttgttagtggttatgtagttctcatgcatacttgc |
280 |
Q |
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| T |
26887175 |
aatgatgacagtgtttcttatttattttttaacgcaggaatttgaatgttgttagaggttatgtggttctcatgcatacttgc |
26887257 |
T |
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