View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_50 (Length: 259)
Name: NF4005_high_50
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 34686234 - 34686002
Alignment:
| Q |
11 |
caaaggattcacaactcagggctgcgaagattttaagtgcagtttctgacagttgtgaacaagaaaactccaaagagaatgagtcatttttcaagttcag |
110 |
Q |
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| T |
34686234 |
caaaggattcacaactcagggctgcaaagattttaagtgcagtttctgacagttgtgaacaagaaaactccaaagagaatgagtcatttttcaagttcag |
34686135 |
T |
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| Q |
111 |
ccacaaggtcatggccaacaggtggaagcagctaagagaagtagtgcatcatagtgaattgttcagcttatcccaattttcccctgcattttgtaacttt |
210 |
Q |
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| T |
34686134 |
ccacaaggtcatggcgaacaggtggaagcagctaagagaagtagtgcatcatagtgaattgttcagcttatcccaattttcccctgcattttgtaacttt |
34686035 |
T |
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| Q |
211 |
ttcaatcgagtgttggaacctcaaccaggtatt |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34686034 |
ttcaatcgagtgttggaacctcaaccaggtatt |
34686002 |
T |
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