View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_55 (Length: 250)
Name: NF4005_high_55
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 44983814 - 44983577
Alignment:
| Q |
1 |
accctcctccgtccactctccaatccatctactctcaagacatctttcttctctcgttcccttaaccttttacttcatcctaatcaactacaacttactg |
100 |
Q |
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| T |
44983814 |
accctcctccgtccactctccaatccatctactctcaagacatctttcttctctcgttcccttaaccttttacttcatcctaatcaactacaactt---g |
44983718 |
T |
|
| Q |
101 |
cttatggacctcccaggtttaccatgcgtgtagcttccaaacaagcttatatctgtcgtgactgcgggttattttccactcttatgctttctttatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44983717 |
cttatggacctcccaggtttaccatgcgtgtagcttccaaacaagcttatatctgtcgtgactgcgggttattttccactcttatgctttctgtatcatt |
44983618 |
T |
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| Q |
201 |
ctctttttactatctatctatatatgaatgttgagaataat |
241 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
44983617 |
ctctttttactatctatctatatatgaatgttgataataat |
44983577 |
T |
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