View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_60 (Length: 243)
Name: NF4005_high_60
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 35388244 - 35388392
Alignment:
| Q |
37 |
tatgtatatgctactccaacaatactgattaaacatcaaaacaaaaatcaaagagtgttaccaaatagtttaccttaataaattgtttaggacnnnnnnn |
136 |
Q |
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| T |
35388244 |
tatgtatatgctcctccaacaatactgattaaacatcaaaacaaaaatcaaagagcgtt-----------taccttaataaaatgtttaggacaagaaaa |
35388332 |
T |
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| Q |
137 |
tta-tcaacatattgaaaatgatttaaggccataccttcaagaagatgggtatacacatt |
195 |
Q |
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| T |
35388333 |
ttaatcaacatattgaagatgatttaaggccataccttcaagaagatgggtatacacatt |
35388392 |
T |
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