View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_high_65 (Length: 233)
Name: NF4005_high_65
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21434693 - 21434917
Alignment:
| Q |
1 |
tatgtctcatatgttgctgataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434693 |
tatgtctcatatgttgctgataaaatgtttgttgtatttgacatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatc |
21434792 |
T |
|
| Q |
101 |
gagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaatataagttaacttgtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
21434793 |
gagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgacggaaatatcagttaacttgtca |
21434892 |
T |
|
| Q |
201 |
tcctagtttgatattctgatgatgt |
225 |
Q |
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|||||||||||||||||||| |||| |
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| T |
21434893 |
tcctagtttgatattctgataatgt |
21434917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 26990538 - 26990739
Alignment:
| Q |
13 |
gttgctgataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatcgagatgtgaggc |
112 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26990538 |
gttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtggggatttgtaggaacttcaaggagatcttgttgatcgagatgtgaggc |
26990637 |
T |
|
| Q |
113 |
aggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaatataagttaacttgtcatcctagtttgat |
212 |
Q |
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| T |
26990638 |
aggtagttagttatc---ttgttattcatctttcttctggttcgtgca--------ttttgctgatggaaatataagttaatttgtcatcctagtgtcat |
26990726 |
T |
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| Q |
213 |
attctgatgatgt |
225 |
Q |
| |
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|||||||| |||| |
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| T |
26990727 |
attctgataatgt |
26990739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27074406 - 27074193
Alignment:
| Q |
1 |
tatgtctcatatgttgctgataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatc |
100 |
Q |
| |
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||||||| ||| |||| |||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||| |||| |
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| T |
27074406 |
tatgtctgataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtggggatttgtaggaacttcaaggagatcttgttgatc |
27074307 |
T |
|
| Q |
101 |
gagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaatataagttaacttgtca |
200 |
Q |
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||||||||||||||||||||||||||| ||| |||| ||||||||||| ||| ||||| ||||| ||||||||||||||||||| |||||| |
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| T |
27074306 |
gagatgtgaggcaggtagttagttatctttt---tattcatctttcttctggtttgtgca--------ttttgctgatggaaatataagttaatttgtca |
27074218 |
T |
|
| Q |
201 |
tcctagtttgatattctgatgatgt |
225 |
Q |
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||||||| | |||||||||| |||| |
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| T |
27074217 |
tcctagtgtcatattctgataatgt |
27074193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 27029420 - 27029570
Alignment:
| Q |
13 |
gttgctgataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatcgagatgtgaggc |
112 |
Q |
| |
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|||| |||||||| ||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27029420 |
gttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgtagtgggaatttgtaggaacttcaaggagatcttgttgatcgagatgtgaggc |
27029519 |
T |
|
| Q |
113 |
aggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgt |
166 |
Q |
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||||||||||||||| ||| |||| ||||||||||| ||||||||||||||| |
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| T |
27029520 |
aggtagttagttatc---ttgttattcatctttcttctggttcgtgcattttgt |
27029570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 27153450 - 27153610
Alignment:
| Q |
5 |
tctcatatgttgctgataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatcgaga |
104 |
Q |
| |
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||||||| || |||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| ||| |
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| T |
27153450 |
tctcatacgtcgctgataaaaagtctgttgtatttgatatattgctaaaactgtgtggtgggaatttgttggaacttcaaggagaccttgtcgatcaaga |
27153549 |
T |
|
| Q |
105 |
tgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttg |
165 |
Q |
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|||||||| ||| |||||||| | |||||| |||||||||||||||||| ||||||||| |
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| T |
27153550 |
catgaggcagatagctagttatcttgttgatagttatctttcttctagttcatgcattttg |
27153610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 34692795 - 34692996
Alignment:
| Q |
13 |
gttgctgataaaatgtttgttgtatttgatatattgctaaaactgtatggtggggttttgtaggaacttcaaggagatcttgtcgatcgagatgtgaggc |
112 |
Q |
| |
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|||| |||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34692795 |
gttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtggggatttgtaggaacttcaaggagatcttgttgatcgagatgtgaggc |
34692894 |
T |
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| Q |
113 |
aggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaatataagttaacttgtcatcctagtttgat |
212 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||| | || |
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| T |
34692895 |
aggtagttagttatctttt---tattcatctttcttctggttcgtgca--------ttttgctgatggaaatataagttaatttgtcatcctagtgtcat |
34692983 |
T |
|
| Q |
213 |
attctgatgatgt |
225 |
Q |
| |
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|||||||| |||| |
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| T |
34692984 |
attctgataatgt |
34692996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 50172059 - 50172008
Alignment:
| Q |
70 |
ttgtaggaacttcaaggagatcttgtcgatcgagatgtgaggcaggtagtta |
121 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50172059 |
ttgtagaaacttcaaggagatcttgttgatcgagatgtgaggcaggtagtta |
50172008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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