View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4005_high_69 (Length: 227)

Name: NF4005_high_69
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4005_high_69
NF4005_high_69
[»] chr2 (3 HSPs)
chr2 (68-217)||(13486066-13486215)
chr2 (1-40)||(13485997-13486036)
chr2 (1-40)||(13492437-13492476)
[»] chr8 (2 HSPs)
chr8 (106-214)||(14958086-14958195)
chr8 (136-189)||(9293239-9293293)
[»] chr6 (3 HSPs)
chr6 (112-196)||(12155378-12155461)
chr6 (124-213)||(33908575-33908665)
chr6 (109-206)||(9627123-9627221)
[»] chr7 (1 HSPs)
chr7 (114-173)||(15077096-15077156)
[»] chr3 (2 HSPs)
chr3 (136-195)||(11630110-11630170)
chr3 (136-214)||(8543101-8543181)
[»] chr5 (3 HSPs)
chr5 (136-196)||(7237076-7237137)
chr5 (115-214)||(38755695-38755792)
chr5 (124-176)||(41715151-41715204)
[»] chr1 (3 HSPs)
chr1 (112-196)||(7440921-7441006)
chr1 (136-189)||(6397666-6397720)
chr1 (124-172)||(28666886-28666935)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 13486066 - 13486215
Alignment:
Q  68 ttgtatgcaactatttatacgtggctttcgaattttaaggttattgttagaacgaaaactagtaactgaagattaaataagagaacgaaagaaaaaacaa 167  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13486066 ttgtatgcaactatttatatgtggctttcgaattttaaggttattgttagaacgaaaactaataactgaagattaaataagagaacgaaagaaaaaacaa 13486165  T
Q  168 tgaacatacaatattttttaacacagttcaatcaattgtacctacctatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13486166 tgaacatacaatattttttaacacagttcaatcaattgtacctacctatg 13486215  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13485997 - 13486036
Alignment:
Q  1 acctcccttcaagaaattataataatacttcatctattca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13485997 acctcccttcaagaaattataataatacttcatctattca 13486036  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13492437 - 13492476
Alignment:
Q  1 acctcccttcaagaaattataataatacttcatctattca 40  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  13492437 acctcctttcaataaattataataatacttcatctattca 13492476  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 14958195 - 14958086
Alignment:
Q  106 ggttattgttagaacgaaaactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaatt 204  Q
    ||||||||||||||| | ||||||||||  ||||||||| ||||||||||||||  || ||||||||||||  |||||| ||||||||||||   |||||    
T  14958195 ggttattgttagaacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaatt 14958096  T
Q  205 gtacctacct 214  Q
    || |||||||    
T  14958095 gtgcctacct 14958086  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 9293239 - 9293293
Alignment:
Q  136 aagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaac 189  Q
    |||||||||||||||||| ||||| ||| |||||||||| ||||||||| |||||    
T  9293239 aagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaac 9293293  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 12155378 - 12155461
Alignment:
Q  112 tgttagaacgaaaactagtaactgaagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagttc 196  Q
    ||||||||| | ||||||||||  || ||||  ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  12155378 tgttagaacaacaactagtaacaaaaaatta--taagagaacgaaagagaaagacaatgaacacacaatattttttaacacagttc 12155461  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 33908575 - 33908665
Alignment:
Q  124 aactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaattgtacctacc 213  Q
    ||||||||||  || ||||||||||||||||||||| ||| |||||||||| |  |||||| ||||| |||||| | ||||||| ||||||    
T  33908575 aactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcctacc 33908665  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 9627123 - 9627221
Alignment:
Q  109 tattgttagaacgaaaactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaattgt 206  Q
    |||| ||||||| | |||||| |||  ||||||||||||||||| |||||| ||| |||||||||| |  |||||| ||||| |||||||  |||||||    
T  9627123 tatttttagaacaacaactagaaacaaaagattaaataagagaatgaaagagaaacacaatgaacacatgatatttgttaacccagttcagccaattgt 9627221  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 15077096 - 15077156
Alignment:
Q  114 ttagaacgaaaactagtaactgaagattaaataagagaacgaaag-aaaaaacaatgaaca 173  Q
    ||||||||| ||||||||||   |||||||||||||||||||||| |||||||||||||||    
T  15077096 ttagaacgacaactagtaacaacagattaaataagagaacgaaagtaaaaaacaatgaaca 15077156  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 11630170 - 11630110
Alignment:
Q  136 aagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagtt 195  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| |||||| |||||||||||    
T  11630170 aagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaacacagtt 11630110  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 8543181 - 8543101
Alignment:
Q  136 aagattaaataagagaacgaaagaaaaaa--caatgaacatacaatattttttaacacagttcaatcaattgtacctacct 214  Q
    |||||||||||||||||||||  || |||  |||||||||||| |||||| ||||| ||||||   ||||||| |||||||    
T  8543181 aagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaattgtgcctacct 8543101  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 7237076 - 7237137
Alignment:
Q  136 aagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagttc 196  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||| ||| | ||||||    
T  7237076 aagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttc 7237137  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 38755792 - 38755695
Alignment:
Q  115 tagaacgaaaactagtaactgaagattaaataagagaacgaaagaaaaaacaatgaacatacaatattttttaacacagttcaatcaattgtacctacct 214  Q
    |||||| | ||||||||||  |||||||||||||||||||||||| |||   ||||||| || |||||| |||| ||||||   |||||||| |||||||    
T  38755792 tagaacaacaactagtaacaaaagattaaataagagaacgaaagagaaa--gatgaacacaccatatttgttaatacagtttggtcaattgtgcctacct 38755695  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 41715204 - 41715151
Alignment:
Q  124 aactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatac 176  Q
    ||||||||||  |||||||||||||||||||||||| ||| ||||| |||||||    
T  41715204 aactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatac 41715151  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 7441006 - 7440921
Alignment:
Q  112 tgttagaacgaaaactagtaactgaagattaaataagagaacgaaag-aaaaaacaatgaacatacaatattttttaacacagttc 196  Q
    ||||||||| | | ||||||||  ||||||||||||||||||||||| ||||||||||  | |||| |||||| ||||| ||||||    
T  7441006 tgttagaacaacatctagtaacataagattaaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaacgcagttc 7440921  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 6397666 - 6397720
Alignment:
Q  136 aagattaaataagagaacgaaag-aaaaaacaatgaacatacaatattttttaac 189  Q
    |||||||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  6397666 aagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaac 6397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 28666935 - 28666886
Alignment:
Q  124 aactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaac 172  Q
    ||||||||||  |||||||||||||||||||||||| ||| |||||||||    
T  28666935 aactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaac 28666886  T

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