View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4005_low_1 (Length: 1513)
Name: NF4005_low_1
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 716; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 732 - 1511
Target Start/End: Complemental strand, 5622206 - 5621427
Alignment:
| Q |
732 |
acatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatttt |
831 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5622206 |
acatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacaatatttt |
5622107 |
T |
|
| Q |
832 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
931 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5622106 |
tccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaaaaatgtcgaggaaacaattgtcaatagttactgatcaagcaatttta |
5622007 |
T |
|
| Q |
932 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgtcgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
1031 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5622006 |
gtttgcatgcagcaggtaaggcatattatgagcataatagatgttgttagtatgacaactacagaaaaaataactattacaacttaatggttgagaaaac |
5621907 |
T |
|
| Q |
1032 |
cagggcaagtagcagattagtaatacttttttaaggaacaacatcgcaatagacaccaatataacagcaacaccaacagactcaaagtgtttactacaat |
1131 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5621906 |
cagggcaagtagcagattagcaatactcttttaaggaacaacatcgcaatagacaccaatataacagcaacgccaacagactcaaagtgtttactacaat |
5621807 |
T |
|
| Q |
1132 |
ccttcataaatacatattcaaatttcattttctaattactgtaatatctctgcagaaatagtagttcatatagtacaatttaccgataccacaagttgca |
1231 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5621806 |
ccttcataaatacatattcaaatttcatttgctaattactgtaatatctcagcagaaatagtagttcatatagtacaatttaccgataccacaagttgca |
5621707 |
T |
|
| Q |
1232 |
agaagcaagcaattggtatagctctttgattttaaacctaaatgttgtacgcgctccattggaagcacggtacagatgtgtaaagtaaataaaacagcat |
1331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
5621706 |
agaagcaagcaattggtatagctctttgattttatacctaaatgttgtacacgctccatcagaagcacagtacagatgtgtaaagtaaatataacagcat |
5621607 |
T |
|
| Q |
1332 |
gcatgaacgacgagatctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatttggaagtaatgttctctaaagttt |
1431 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5621606 |
gcatgaacgatgagatctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatatggaagtaatgttctctaaagttt |
5621507 |
T |
|
| Q |
1432 |
ctcttaaagaatccatgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccag |
1511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621506 |
ctcttaaagaatccatgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccag |
5621427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 11 - 677
Target Start/End: Complemental strand, 5639137 - 5638469
Alignment:
| Q |
11 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5639137 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
5639038 |
T |
|
| Q |
111 |
aaaatgaaagaagttccgtgaaaaacactccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgctta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
5639037 |
aaaatgaaagaagttccgtgaaaaacactccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgctta |
5638938 |
T |
|
| Q |
211 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638937 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
5638838 |
T |
|
| Q |
310 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgacta-nnnnnnnacttaaatt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5638837 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatt |
5638738 |
T |
|
| Q |
409 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638737 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
5638638 |
T |
|
| Q |
509 |
tcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttata |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638637 |
tcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttata |
5638538 |
T |
|
| Q |
609 |
agatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttattt |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5638537 |
agatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttattt |
5638469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 22965327 - 22965261
Alignment:
| Q |
31 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaagg |
97 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22965327 |
gttatgcacatcacttaatcatgcaaattttatagttcggacctgcaaattcaggtattaatgaagg |
22965261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 698 - 739
Target Start/End: Complemental strand, 5638448 - 5638407
Alignment:
| Q |
698 |
tatacacacccacgcccaaatagaactttttagtacatactg |
739 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5638448 |
tatacacacccacgcccaaatagaacttttcagtacatactg |
5638407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 3e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 730 - 884
Target Start/End: Original strand, 30634587 - 30634741
Alignment:
| Q |
730 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatt |
829 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30634587 |
gtacatactggaactccgtagtgttcagtgagacctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
30634686 |
T |
|
| Q |
830 |
tttccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
884 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
30634687 |
tttccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
30634741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 6e-56
Query Start/End: Original strand, 469 - 642
Target Start/End: Original strand, 30634326 - 30634501
Alignment:
| Q |
469 |
tttcagtatacatggaaatccaagaaggtt-atgaa-cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaat |
566 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30634326 |
tttcagtacacttggaaatctaagttggtttatgaatcagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaat |
30634425 |
T |
|
| Q |
567 |
cctccttctgtggccagtgcatgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccac |
642 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
30634426 |
cctccttctgtggccaatgcatgtcccatagcagcagttataagatctaacttctcaacctgcagcacacgaccac |
30634501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 1346 - 1511
Target Start/End: Original strand, 30635218 - 30635383
Alignment:
| Q |
1346 |
atctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatttggaagtaatgttctctaaagtttctcttaaagaatcc |
1445 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
30635218 |
atctacctggtagagagcttcgacaacaatataacgcctcaaattcttggtgtgcttatacttagaagtaagcttctctaaagtttcttctaaagaatcc |
30635317 |
T |
|
| Q |
1446 |
atgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccag |
1511 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30635318 |
atgtcattgtgcttaaaatacacgacagtgcttctagaaagataaaggccattctgtattccccag |
30635383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 3e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 730 - 884
Target Start/End: Original strand, 21423373 - 21423527
Alignment:
| Q |
730 |
gtacatactggaactccatagtgttcagtgagatctcttccagaacttccaagcacaccaaatgagttgctctcatccagtaaaatacgaaaacgatatt |
829 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21423373 |
gtacatactggaactccatagtgttcagtgagacctcttccagaacttccaagcacgccaaatgagttgctctcatccagtaaaatacgaaaccgatatt |
21423472 |
T |
|
| Q |
830 |
tttccttcaatttaatgatctcatctaagggtgctatttggccagagttctgaaa |
884 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
21423473 |
tttccttcaatttaatgatatcatctaagggtgctatttgaccagaattctgaaa |
21423527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 515 - 636
Target Start/End: Original strand, 21423160 - 21423281
Alignment:
| Q |
515 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttataagatct |
614 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttataagatct |
21423259 |
T |
|
| Q |
615 |
aacttatcaacctgcagcacac |
636 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
21423260 |
aacttctcaacctgcagcacac |
21423281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 1346 - 1511
Target Start/End: Original strand, 21424019 - 21424184
Alignment:
| Q |
1346 |
atctacctggtagagagcttcaatgacaatataacgcctcaaattcttggtcctcttatatttggaagtaatgttctctaaagtttctcttaaagaatcc |
1445 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||| ||| |||||||| |||||| |||||||||| |
|
|
| T |
21424019 |
atctacctggtagagagcttcgacaacaatataacgcctcaaattcttggtgtgcttatatttagaactaagcttctctaatgtttcttctaaagaatcc |
21424118 |
T |
|
| Q |
1446 |
atgttattgtgcttaaaatataccactgtgcttctagaaagataaaggccattctgtattccccag |
1511 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21424119 |
atgtcattgtgcttaaaatacacgacagtgcttctagaaagataaaggccattctgtattccccag |
21424184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 38954590 - 38954654
Alignment:
| Q |
31 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaa |
95 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38954590 |
gttatgcacatcgcttaatcatgcaaattttatagtttggacctgcaaattcaggtattaatgaa |
38954654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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