View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_12 (Length: 550)
Name: NF4005_low_12
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 12 - 533
Target Start/End: Complemental strand, 34430619 - 34430098
Alignment:
| Q |
12 |
atgaaggtcggaaattgtgagacctgtatgaatttcaaaatataaagatcaacaaggaggcagaagcatatagagtgagatatccaaagcaactgacaga |
111 |
Q |
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| T |
34430619 |
atgaaggtcggaaattgtgagacctgtataaatttcaaaatataaagatcaacaaggaggcagaagcatatagagtgagatatccaaagcaactgacaga |
34430520 |
T |
|
| Q |
112 |
aagaatacgcttcatcaatatgacattgacattccctcaccattcagatatacaatgtgcttcatcaataacaacaagtgagacggctaacccaccagag |
211 |
Q |
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| T |
34430519 |
aagaatacgcttcatcaatatgacattgacattccctcaccattcagatatacaatgtgcttcatcaataacaacaagtgagacggctaacccaccagag |
34430420 |
T |
|
| Q |
212 |
ataacagacagaaattcttcattcaagaatcgctctggtgaaacaaaaagcacctgtatgaattataattgcaatcagtatctttcacgtgagagttcta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430419 |
ataacagacagaaattcttcattcaagaatcgctctggtgaaacaaaaagcacctgtatgaattataattgcaatcagtatctttcacgtgagagttcta |
34430320 |
T |
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| Q |
312 |
acatcatcgatacagtaaattaacttgcaattcaaatgtgatatgtgaaaatggcttataaataatcaacattcacatgcatgcaatcaatcagcaagat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430319 |
acatcatcgatacagtaaattaacttgcaattcaaatgtgatatgtgaaaatggcttataaataatcaacattcacatgcatgcaatcaatcagcaagat |
34430220 |
T |
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| Q |
412 |
tgctacatatatctacaaaagaagatccaagccaaagttgaactcagttgtcgaaattctcacctttattgtgccttgacgaagctggttaagcgtttca |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430219 |
tgctacatatatctacaaaagaagatccaagccaaagttgaactcagttgtcgaaattctcacctttattgtgccttgacgaagctggttaagcgtttca |
34430120 |
T |
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| Q |
512 |
gaggattcttcaaatgtctaat |
533 |
Q |
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| T |
34430119 |
gaggattcttcaaatgtctaat |
34430098 |
T |
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