View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_13 (Length: 545)
Name: NF4005_low_13
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 527
Target Start/End: Original strand, 5774304 - 5774813
Alignment:
| Q |
10 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
109 |
Q |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
|
| Q |
110 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnnataactgacctgagtttctttaacagtgtatctctcaagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
|
| Q |
210 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
|
| Q |
310 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttgga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5774600 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttgga |
5774695 |
T |
|
| Q |
410 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaa |
509 |
Q |
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| T |
5774696 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
5774795 |
T |
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| Q |
510 |
gtccttaaggtgtggacg |
527 |
Q |
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| T |
5774796 |
gtcctgaaggtgtggacg |
5774813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 170 - 527
Target Start/End: Original strand, 5768189 - 5768533
Alignment:
| Q |
170 |
ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatctt |
269 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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| T |
5768189 |
ataactgacctgagtttctttaacggtgtatctctcgagtaaggttttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatctt |
5768288 |
T |
|
| Q |
270 |
acattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcg |
369 |
Q |
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|| |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||| ||| |
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| T |
5768289 |
acgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat-- |
5768386 |
T |
|
| Q |
370 |
aatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgacgat |
469 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
5768387 |
--tgatgaattacctgaaaaacttccaaatgaaatttggagtcgatttcagaga---------gtgccatgttagtaaggctggtctggcaaacgatgat |
5768475 |
T |
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| Q |
470 |
ggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacg |
527 |
Q |
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| T |
5768476 |
ggctctgtagacattctcggagttcatacgtttggtgcaagtcctgaaggtgtggacg |
5768533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 441 - 530
Target Start/End: Original strand, 5775102 - 5775191
Alignment:
| Q |
441 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtca |
530 |
Q |
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| T |
5775102 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtca |
5775191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
173 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
272 |
Q |
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||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
273 |
ttaaccagcaattcagcctcct |
294 |
Q |
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||||||||||| || ||||||| |
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| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 5768137 - 5768171
Alignment:
| Q |
115 |
tactcattcgattagttacattctaaataacacaa |
149 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa |
5768171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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