View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_17 (Length: 437)
Name: NF4005_low_17
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Original strand, 41263245 - 41263673
Alignment:
| Q |
9 |
agcataggcgacagagaagagataccttgattatgttcatattctggtcctgccaattgaagttcacatttgatacacgagtctcccaaaacagcattta |
108 |
Q |
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| T |
41263245 |
agcacaggcgacagagaagagataccttgattatgttcatattctggtcctgccaattgaagttcacatttgatacacgagtctcccaaaacagcattta |
41263344 |
T |
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| Q |
109 |
ttctttcacatgtctcattttgtcgctttcttgtgtgtagaagttccctattagaaaattgaagcaagtttggttacttggcacactcacacagacacct |
208 |
Q |
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| T |
41263345 |
atctttcacatgtctcattttgtcgctttcttgtgtgtagaagttccctattagaaaattgaagcaagtttggttacttggcacactcacacagacactt |
41263444 |
T |
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| Q |
209 |
gatacgacactaacaccaatacgtaaagaaaatgagttaattgaatgtggtcacatgtatcgtcgtcatgtctttgttagacaccgcatacacttttaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41263445 |
gatacgacactaacaccaatacgtaaagaaaatgagttaattgaatgtggtcacatgtatcgtcgtcatgtctttgttagacaccgcatacacttttaat |
41263544 |
T |
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| Q |
309 |
cagaacttccgtactatagagcttataagcagctgtagactgtagtcccaaaaaataaaatttgcagctgataaatttgtggttgctaagccaggttact |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41263545 |
cagaacttccgtactatagagcttataagcagctgtagactgtagtcccaaaaaataaaatttgcagctgataaatttgtggttgctaagccaggttact |
41263644 |
T |
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| Q |
409 |
ttccatcagttctagcaatgaagtccacc |
437 |
Q |
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| T |
41263645 |
ttccatcagttctagcaatgaagtccacc |
41263673 |
T |
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