View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_18 (Length: 428)
Name: NF4005_low_18
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 44691489 - 44691913
Alignment:
| Q |
1 |
catatactttgcagcagtgaaaagaaaatggggaatcttgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691489 |
catatactttgcagcagtgaaaagaaaatggggaatattgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttg |
44691588 |
T |
|
| Q |
101 |
aaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatg |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
44691589 |
aaaaggtgcttcatccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcgggttcaacaattggatatcaaatg |
44691688 |
T |
|
| Q |
201 |
tgagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctc |
300 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
44691689 |
tgagaccaagacaaaggctggtttgttactttctaaaacttcaattataccaaatcttcatgccattccatgcttatcaatcacatggatatactttctc |
44691788 |
T |
|
| Q |
301 |
tatggccaggataatttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttctctagcattcgc |
400 |
Q |
| |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691789 |
tttggccaggataatttttattaggtatcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttctctagcattcgc |
44691888 |
T |
|
| Q |
401 |
cactttcagtaccctatgctactcc |
425 |
Q |
| |
|
|||||||||||| ||||| |||||| |
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| T |
44691889 |
cactttcagtactctatgatactcc |
44691913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 44681828 - 44682193
Alignment:
| Q |
14 |
gcagtgaaaagaaaatggggaatcttgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44681828 |
gcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaagaaggttttggaaaatttgaaaaggtgcttca |
44681927 |
T |
|
| Q |
114 |
gccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |
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| T |
44681928 |
gccgggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcgggtacaacaattggatatcaagtgtgagacaaagaca |
44682027 |
T |
|
| Q |
214 |
aaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggata |
313 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | | ||||||||| | |||| ||||| |
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| T |
44682028 |
aag----gtttgttactgtctcaaacatcaattaaaccaaatcttcatgtcattccatgcttatcaataacat--aaatactttctttttggctaggat- |
44682120 |
T |
|
| Q |
314 |
atttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctcttt |
387 |
Q |
| |
|
|| || |||| |||||||||||| |||||||| ||||||| || | | ||||||||| ||||||||||||||| |
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|
| T |
44682121 |
-ttgtttttagttgtcatcctggtactatgttaatttgatttctttgtgttttcttaaatatggttatctcttt |
44682193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 44652814 - 44653179
Alignment:
| Q |
14 |
gcagtgaaaagaaaatggggaatcttgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44652814 |
gcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaagaaggttttggaaaatttgaaaaggtgcttca |
44652913 |
T |
|
| Q |
114 |
gccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44652914 |
gccgggatgccattgcatgccatggttccttggaaaaagaattgctggtcatctctctcttcgggtacaacaattggatatcaaatgtgagaccaagaca |
44653013 |
T |
|
| Q |
214 |
aaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatcaatcacttggatatactttctctatggccaggata |
313 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||| || | | ||||||||| | |||| ||||| |
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|
| T |
44653014 |
aaggttc----gttacggtctcaaacatcaattaaaccaagtgttcatgtcattccatgcttaccaataacat--aaatactttctttttggctaggat- |
44653106 |
T |
|
| Q |
314 |
atttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctcttt |
387 |
Q |
| |
|
|| || |||| ||||||||||||||||||||| |||||||||| | | ||||||||| ||||||||||||||| |
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|
| T |
44653107 |
-ttgtttttagttgtcatcctggtgctatgttaatttgattcctttgtgttttcttaaatatggttatctcttt |
44653179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 44631326 - 44631713
Alignment:
| Q |
14 |
gcagtgaaaagaaaatggggaatcttgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
113 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| |||||||||| |
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| T |
44631326 |
gcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatttgaagaggtgcttca |
44631425 |
T |
|
| Q |
114 |
gccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagaca |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44631426 |
gccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaatgtgagaccaagaca |
44631525 |
T |
|
| Q |
214 |
aaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattcc--atgctta--------tcaatcacttggatatactttctctat |
303 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| || | |||||||||| || | |
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|
| T |
44631526 |
aaggt---tttgttactgtctcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacat--atatactttcgctct |
44631620 |
T |
|
| Q |
304 |
ggccagga--------taatttttattaggtgtcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
388 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
44631621 |
ggctaggattttattttcatttttattaggtgtcatcctggtgctatgttattttgatttctatatgttttcttaactatggttatctctttc |
44631713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 44637516 - 44637251
Alignment:
| Q |
14 |
gcagtgaaaagaaaatggggaatcttgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
113 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
44637516 |
gcagttaaaagaaaatggggaatcttttgtgttgtgtgcaagttgatcaatctacagtggctatgaaagagggttttggaaaatttgaagaggtgcttca |
44637417 |
T |
|
| Q |
114 |
gccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagaca |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
44637416 |
gccaggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcggctacagcaattggatataaaatgtgagaccaagaca |
44637317 |
T |
|
| Q |
214 |
aaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattccatgcttatca |
279 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||| |||||| |
|
|
| T |
44637316 |
aaggttcgtttgttactgtctaaaacttcaatttaacgaaatcttcacgtcattccatgattatca |
44637251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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