View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_2 (Length: 1251)
Name: NF4005_low_2
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 739; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 302 - 1232
Target Start/End: Complemental strand, 43069647 - 43068698
Alignment:
| Q |
302 |
tgatggcataaactagcttacgaacgagttttatatatgccggaggtgcatgcaggattcaaccagtgtgctacttccttttccttctacctaacaaac- |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069647 |
tgatggcataaactagcttacgaacgagttttat----gccggaggtgca----ggattcaaccagtgtgctacttccttttccttctacctaacaaaca |
43069556 |
T |
|
| Q |
401 |
---tactactaacatttccacctttatccaaacagttacactagaaatcctatcaccatgtggaaaacataagagtgaggagacactcatcgtgatcaat |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
43069555 |
aactactactaacatttccacctttatccaaacagttacactggaaaccctatcaccatatggaaaacataagagtgaggagacactcat---gatcaat |
43069459 |
T |
|
| Q |
498 |
catctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaata-ttttgtgcatgaaa |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43069458 |
catctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattttcctcaatatttttgtgcatgaaa |
43069359 |
T |
|
| Q |
597 |
tgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattata |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069358 |
tgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctccaaggaaactccctcttctagttattata |
43069259 |
T |
|
| Q |
697 |
caagctcctcttgaagnnnnnnnnngatattgttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggt |
796 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069258 |
caagctcctcttgaagcttttttttgatattgttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggt |
43069159 |
T |
|
| Q |
797 |
ctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgc |
896 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069158 |
ctctctaatttcttagaaagatcttctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgc |
43069059 |
T |
|
| Q |
897 |
aaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatat---------------------aaaaatgcatcatgcatg |
975 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43069058 |
aaatgtcacaataaatatatagaattgaattaaagtacaacaaaatattcatatagaatataaaaattatatatatagcaaaaaaaatgcatcatgcatg |
43068959 |
T |
|
| Q |
976 |
agaa----atattgcttacttcaaagggagatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatgatgaagatgacaaacta |
1071 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43068958 |
agaaatatatattgcttacttcaaagggagatggttcataagttctgatagttcatataagggaccatttgaatgtgatgatgatgaagatgacaaacta |
43068859 |
T |
|
| Q |
1072 |
gaagttgaagaggatacttcttgatcatcatctaactctgatgaagaagatgaacacatagaattcattgaatcttctgtaatagatccattcgaaattg |
1171 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43068858 |
gaagttgaagaggatgcttcttgatcatcatctaactctgatgaagaagatgaacacatagaattcattgaatcttctgtaatagatccattcgaaattg |
43068759 |
T |
|
| Q |
1172 |
aatcagttacatcatcatcatccacatcttgcttaacaatccaatttttgttactgttacc |
1232 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43068758 |
aatcagttacatcatcatcatccacatcttgcttaacaatccaatttttgttactgttacc |
43068698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 43070398 - 43070153
Alignment:
| Q |
20 |
ctatcttcacccctttgcgatttttcttccacttctccctgtgtagctaatttgatttttatttatttaacgttgctagtttattttgattaggctagga |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43070398 |
ctatcttcacccctttacgatttttcttccacttctccttgtgtagctaatttgatttttatttatttaacgttgctagtttattttgattaggctagga |
43070299 |
T |
|
| Q |
120 |
aggatatatatgaactctctaaaatcctgatgtaatgtgaacaattcttattcaatacatgtttataatcacatggtgactatcgtcccttcctcccaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43070298 |
aggatatatatgaactctctaaaatcctgatgtaatgtgaacaattcttattcaatacatgtttataatcacatggtgactatcgtcccttcctcccaat |
43070199 |
T |
|
| Q |
220 |
atatataatttattttaacaaatgatgtacacaagagttaacatat |
265 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43070198 |
atatataatttattttaacaaatgatgtacacaagagttaacatat |
43070153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 43069760 - 43069725
Alignment:
| Q |
259 |
aacatatgtaaaatatttgctgattcatatatatat |
294 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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|
| T |
43069760 |
aacatatataaaatatttgctgattcatatatatat |
43069725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 854 - 904
Target Start/End: Original strand, 34038218 - 34038268
Alignment:
| Q |
854 |
gattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtca |
904 |
Q |
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||||| |||||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
34038218 |
gattgagccttcccttgataaaacattgacaaccctctcctgcaaaagtca |
34038268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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