View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_22 (Length: 383)
Name: NF4005_low_22
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 28751757 - 28752127
Alignment:
| Q |
1 |
tgtttcgagattcgatacctcaatcagtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctaga |
100 |
Q |
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| T |
28751757 |
tgtttcgagattcgatacctcaatcagtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctaga |
28751856 |
T |
|
| Q |
101 |
ttctcctcgagaagttcgtcgatacccatccgaaacttctcttcaacagcagaacttgattttggttcttccaacttaaacatttcctcaataacatgat |
200 |
Q |
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| T |
28751857 |
ttctcctcgagaagttcgtcgatacccatccgaaacttctcttcaacagcagaacttgattctggttcttctaacttaaacattttctcaataacatgat |
28751956 |
T |
|
| Q |
201 |
tttctggtggctgcaaaggaggtaactctccgatttcttcatttccctcaaggcttttgtgcaaaagacttagtttctgacgtaggagtcgaatctcttc |
300 |
Q |
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| T |
28751957 |
tttctggtggctgcaaaggaggtaactctccgatttcttcatttccctcaaggcttttgtgcaaaagacttagtttctgacgtaggagtcgaatctcttc |
28752056 |
T |
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| Q |
301 |
gtctttcacggcattagaagtcttcaattctttcacctgcaatgatgactcaaagagtgcatcttgatgat |
371 |
Q |
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| T |
28752057 |
gtctttcacggcattagaagtcttcaattctttcacctgcaatgatgactcaaagagtgcatcttgatgat |
28752127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 6623166 - 6623294
Alignment:
| Q |
26 |
agtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagttcgtcgatac |
125 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| | || | |
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| T |
6623166 |
agtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattc |
6623265 |
T |
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| Q |
126 |
ccatccgaaacttctcttcaacagcagaa |
154 |
Q |
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|| ||| || ||||||||| |||||||| |
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| T |
6623266 |
ccctcctgaatttctcttcagcagcagaa |
6623294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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