View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_23 (Length: 383)
Name: NF4005_low_23
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 30505368 - 30505002
Alignment:
| Q |
1 |
atgttaatttttatttgaaataaaaatgatagagatcggatgaatgtgatttggttagcataaatggccacatcttctcctactaaaatgttacttcaac |
100 |
Q |
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| T |
30505368 |
atgttaatttttatttgaaattaaaatgatagagaa-ggattaatgtgatttgattagcataaatggctacatcttctcctacaaaaatgttacttcaac |
30505270 |
T |
|
| Q |
101 |
aaaattaacaacttctttcttctttttcatgttgctgaagtctaaaggtaaaccacttttgatcatgttattcaatgaaaataaaatgtaaacttattag |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
30505269 |
aaaa----caacttctttcttctttttcatgttgctgaagtctaaaggtaaaccacttctgatcatgttattcaatgaaaataaaatgtaaacttattgg |
30505174 |
T |
|
| Q |
201 |
agttataagactcatcagaaattaagacaagaaatagttgagagcttatattgtatgtaatatacctggcagtttctctggatgagtatagcagattcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505173 |
agttataagactcatcagaaattaagacaagaaat---tgagagcttatattgtatgcaatatacctggcagtttctctggatgagtatagcagattcca |
30505077 |
T |
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| Q |
301 |
ttttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatctgactttgcctttgct |
375 |
Q |
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| T |
30505076 |
ttttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatctgactttgcctttgct |
30505002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 30512713 - 30512649
Alignment:
| Q |
295 |
attccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatc |
359 |
Q |
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| T |
30512713 |
attccattctatccttcaagagttgggatgaactcgtcaattagagggtgaagcttatgaatatc |
30512649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 34832254 - 34832337
Alignment:
| Q |
264 |
acctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaag |
347 |
Q |
| |
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|||||| || || |||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||| ||||| |
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| T |
34832254 |
acctggtagcttttctggatgtgtataacagattccgttctctccttcaagtgttggtatgaactcatcaataagaggatgaag |
34832337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 38886696 - 38886611
Alignment:
| Q |
274 |
ttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatc |
359 |
Q |
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| T |
38886696 |
ttctctggatgagtacagcagattccattctctccttcaagagtagggatgaattcatcaattaaaggatgaagcatttgaatatc |
38886611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 28950946 - 28951029
Alignment:
| Q |
264 |
acctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaag |
347 |
Q |
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|||||| || || |||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||| ||||| |
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| T |
28950946 |
acctggtagcttttctggatgtgtataacagattccgttctctccttcaagtgttggtatgaactcatcaataagaggatgaag |
28951029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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