View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_24 (Length: 380)
Name: NF4005_low_24
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 5568132 - 5568481
Alignment:
| Q |
16 |
caaactaattaaat--gtgttcaacgaaatacaataataaaatgtgtttgtctttctattagtatcaataaaatatttatgtttgtcaccatatatacaa |
113 |
Q |
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| T |
5568132 |
caaactaattaaatatgtgttcaacgaaatacaataataaaatgtgtttgtctttctattagtatcaataaaatatttatgtttgtcaccatatatacaa |
5568231 |
T |
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| Q |
114 |
gtcttgcaccaatatgagacaaataaaacccctaagtttacgggtcaataataatagtagtaaacgcctcagtgagagtgttccaatttcgactctttct |
213 |
Q |
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| T |
5568232 |
gtcttgcaccaatatgagacaaaaaaaacccctaagtttacgggtcaataataatagtagtaaacgcctcagtgagagtgttccaattttgactctttct |
5568331 |
T |
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| Q |
214 |
taaagcgcgtaatgagtggttaggtgagtatcggcgaaaaagcccttgaacaaatacatcttaaagtagggtccacacgccttaacaagagtttatatct |
313 |
Q |
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| T |
5568332 |
t-aagcgcgtaatgagtggttaggtgagtatcggcgaaaaagcccttgaacatatacatcttaaagtagggtccacacgccttaactagtgtttatatct |
5568430 |
T |
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| Q |
314 |
ctattctatttctattcctatcctatgaaccagaaagaaagacacacatac |
364 |
Q |
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| T |
5568431 |
ctattctatttctattcctatcctatgaaccagaaagaaagacacacatac |
5568481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 5572303 - 5572350
Alignment:
| Q |
283 |
ggtccacacgccttaacaagagtttatatctct-attctatttctatt |
329 |
Q |
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| T |
5572303 |
ggtccacacgccttcacaagagtttatatctctcattctatttctatt |
5572350 |
T |
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