View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_25 (Length: 372)
Name: NF4005_low_25
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 27090857 - 27091202
Alignment:
| Q |
10 |
catcatcattcatatataaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090857 |
catcatcattcatatataaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgt |
27090956 |
T |
|
| Q |
110 |
gctaaagattttgctagtattatccaaacttgaaacatatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgcta |
209 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090957 |
gctaaagattttgctagtattatccaaacttgaaa-atatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgcta |
27091055 |
T |
|
| Q |
210 |
tgctttgcacagaagtgggccttggagtgagacttagggagagaatcatgaggggaagaaggataagatgatgataagacaaaaggattatggttattaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27091056 |
tgctttgcacagaagtgggccttggagtgagacttagtgagagaatcatgaggggaagaaggataagatgatgataagacaaaaggattatggttattaa |
27091155 |
T |
|
| Q |
310 |
catcctcatcttcttcatagttatagctatgttgtaattgatgctca |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27091156 |
catcctcatcttcttcatagttatagctatgttgtaattgatgctca |
27091202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 27187444 - 27187099
Alignment:
| Q |
10 |
catcatcattcatatataaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgt |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187444 |
catcatcattcatatataaatctacaaaatacatatatggttcataaatgaggcagaacaacgtatcattcaaatctataaaataatatgtaaaaagtgt |
27187345 |
T |
|
| Q |
110 |
gctaaagattttgctagtattatccaaacttgaaacatatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgcta |
209 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187344 |
gctaaagattttgctagtattatccaaacttgaaa-atatatttaccaaagtgttttacaagtaaaattaccttgattccattcttgaggaaacatgcta |
27187246 |
T |
|
| Q |
210 |
tgctttgcacagaagtgggccttggagtgagacttagggagagaatcatgaggggaagaaggataagatgatgataagacaaaaggattatggttattaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187245 |
tgctttgcacagaagtgggccttggagtgagacttagtgagagaatcatgaggggaagaaggataagatgatgataagacaaaaggattatggttattaa |
27187146 |
T |
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| Q |
310 |
catcctcatcttcttcatagttatagctatgttgtaattgatgctca |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27187145 |
catcctcatcttcttcatagttatagctatgttgtaattgatgctca |
27187099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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