View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_26 (Length: 370)
Name: NF4005_low_26
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 353
Target Start/End: Complemental strand, 43099880 - 43099551
Alignment:
| Q |
24 |
attctatcaagcaccagcaaccaccttcacatatgaagaagaacccccggctgttgtaagatccttcctctgcggcttcatctctgtcatgacggccatc |
123 |
Q |
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| T |
43099880 |
attctatcaagcaccagcaaccaccttcacatatgaagaagaacccccggctgttgtaagatccttcctctgcggcttcatctctgtcatgaccgccatc |
43099781 |
T |
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| Q |
124 |
gtagctctcttcggcttaatctccttgatcggctattttgttctcaaaccccgtatccctgagttcagtgtcaattcagcttcacttacctcattcaatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099780 |
gtagctctcttcggcttaatctccttgatcggctattttgttctcaaaccccgtatccctgagttcagtgtcaattcagcttcacttacctcattcaatt |
43099681 |
T |
|
| Q |
224 |
tgaccggctccggtctcaatgcaaaatgggacatcacactcattgtctcaaaccctaacaaaaaactcgatatcacatacgacgccgttgctgccagtgt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099680 |
tgaccggctccggtctcaatgcaaaatgggacatcacactcattgtctcaaaccctaacaaaaaactcgatatcacatacgacgccgttgctgccagtgt |
43099581 |
T |
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| Q |
324 |
cttttacggagatgatgaatatggtgttct |
353 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
43099580 |
cttttacggtgatgatgaatatggtgttct |
43099551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 43106880 - 43106786
Alignment:
| Q |
238 |
ctcaatgcaaaatgggacatcacactcattgtctcaaaccctaacaaaaaactcgatatcacatacgacgccgttgctgccagtgtcttttacgg |
332 |
Q |
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|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||| |||||||| ||| ||||||||||||| |
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| T |
43106880 |
ctcactgcaaaatgggacatcacattcattgcctcaaaccctaacaaaaaactcgacatcacctacaacgccgtttctgttggtgtcttttacgg |
43106786 |
T |
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