View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4005_low_30 (Length: 347)
Name: NF4005_low_30
Description: NF4005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4005_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 112 - 337
Target Start/End: Original strand, 7095397 - 7095622
Alignment:
| Q |
112 |
cttgtacaaaaaagcaagaagcctactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatt |
211 |
Q |
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| T |
7095397 |
cttgtgcaaaaaagcaagaagcttactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatt |
7095496 |
T |
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| Q |
212 |
tgaatgttaatgttcaagttgagaatagaagggatttgatggaggtgttgactaaggtgaatggaattcttgagattttgatgaaaatggatcagtttga |
311 |
Q |
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| T |
7095497 |
tgaatgttaatgttcaagttgagaatagaagggatttgatggaggtgttgactaaggtgaatggaattcttgagattttgatgaaaatggatcagtttga |
7095596 |
T |
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| Q |
312 |
taggaatcaaataaggggtttctgtg |
337 |
Q |
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| T |
7095597 |
taggaatcaaataaggggtttgtgtg |
7095622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 6717725 - 6717594
Alignment:
| Q |
120 |
aaaaagcaagaagcctactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatttgaatgtt |
219 |
Q |
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| T |
6717725 |
aaaaagtaagaagcttactttatggaactttctttcttttccaggttaccaaggaaagcttaagaagaaagatgaaggacttcagagacatttgtctgtt |
6717626 |
T |
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| Q |
220 |
aatgttcaagttgagaatagaagggatttgat |
251 |
Q |
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| T |
6717625 |
aatgttcaacttgagaataaaaaagatttgat |
6717594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7095266 - 7095325
Alignment:
| Q |
1 |
ttggaagctttggctcctttggttgcagaaatgaatggtttcaacgatttgttgggtcga |
60 |
Q |
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| T |
7095266 |
ttggaagctttggctcctttggttgcagaaatgaatggtttcaacgatttgttgggtcga |
7095325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 255
Target Start/End: Complemental strand, 6762562 - 6762427
Alignment:
| Q |
120 |
aaaaagcaagaagcctactcgatggaactttccttctttcccacgttaccaaggaaagcttaagaagaaagatgaagggctaaagagacatttgaatgtt |
219 |
Q |
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| T |
6762562 |
aaaaagcaagaagcttacttggaagaacttttatttttttccaggttaccaaggaaagcttaagaagcaagacgcgaagcttgagagacacttgaatgtt |
6762463 |
T |
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| Q |
220 |
aatgttcaagttgagaatagaagggatttgatggag |
255 |
Q |
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| T |
6762462 |
aatgtgcaagtcgagaataaaaatgatttgatggag |
6762427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 6740720 - 6740682
Alignment:
| Q |
226 |
caagttgagaatagaagggatttgatggaggtgttgact |
264 |
Q |
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| T |
6740720 |
caagttgagaataaaagggatttgatggaggtgttgact |
6740682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 6725619 - 6725581
Alignment:
| Q |
226 |
caagttgagaatagaagggatttgatggaggtgttgact |
264 |
Q |
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| T |
6725619 |
caagttgaaaataaaagggatttgatggaggtgttgact |
6725581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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